PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G301000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 234aa    MW: 25264.5 Da    PI: 8.8878
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G301000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-21666257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++R+++t+eql +Lee++++  r+p+a+e+++++++l    +++ ++V++WFqN++a+e++
  Brast05G301000.1.p  6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66
                        58*****************99**************************************97 PP
2Wus_type_Homeobox121.34e-39567264
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                        ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+
  Brast05G301000.1.p  5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67
                        689***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.463267IPR001356Homeobox domain
SMARTSM003896.8E-6471IPR001356Homeobox domain
SuperFamilySSF466899.41E-12470IPR009057Homeodomain-like
CDDcd000867.84E-4560No hitNo description
PfamPF000461.5E-18666IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.6E-8866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH  60
KARERQRLRR RLCARHQQAA SPSPMATPPP PAAAAASAAN VMHPAVMQLH HPYTACSFMP  120
PQGYLQQDAG GAAPVSGLEF AAAAAGGGGK AHQQHHEWTT QQQQQQMMMM MTENNNNINA  180
GSGSSGAGGM APPPWPCCRP LRTLELFPTK STGGGLRDEC SSSKSSSCST STN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269|PubMed:15169755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G301000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9690871e-103EU969087.1 Zea mays clone 325979 WUSCHEL-related homeobox 3B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310712.16e-82WUSCHEL-related homeobox 3
SwissprotQ70UV13e-62WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBLA0A0Q3LJN31e-80A0A0Q3LJN3_BRADI; Uncharacterized protein
STRINGTraes_5DL_193218298.12e-78(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-34WOX family protein
Publications ? help Back to Top
  1. Scanlon MJ
    NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development.
    Development, 2000. 127(21): p. 4573-85
    [PMID:11023861]