PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G008800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 266aa    MW: 28527.9 Da    PI: 7.9055
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G008800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.23.8e-152181257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Brast06G008800.1.p 21 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLqrfgPVADANVFYWFQNRRSRSRR 81
                        89*****************99****************99999****************997 PP
2Wus_type_Homeobox105.73e-342083265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ L+++G + d+NVfyWFQNr++R+r++q
  Brast06G008800.1.p 20 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLQRFGPVADANVFYWFQNRRSRSRRRQ 83
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-131488IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-81689IPR009057Homeodomain-like
PROSITE profilePS5007111.2721782IPR001356Homeobox domain
SMARTSM003897.0E-61986IPR001356Homeobox domain
PfamPF000467.3E-132181IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEGGGQIHSE ESSRMQGETV RSRWTPKPEQ ILILESIFNS GMVNPPKDET VRIRKLLQRF  60
GPVADANVFY WFQNRRSRSR RRQRQLQQAQ QAQQQAQAQQ SPAALSPAPA MAAAHMGGYS  120
SSSSSSSTWP PSSPPSAGIM MDGGGGDDLF AISRQMGYGS GSSSSSSAPA AAAMAHEHQQ  180
QMYYSYQQQQ QAAGGMMMSS STMTVYINGV ATEVPARGPV DVRAMFGDDA VLVHAAGGLL  240
PVDDYGVLLH SLQMGESYFL VSRSA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G008800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635031e-78AK063503.1 Oryza sativa Japonica Group cDNA clone:001-116-E11, full insert sequence.
GenBankAK0732321e-78AK073232.1 Oryza sativa Japonica Group cDNA clone:J033021B15, full insert sequence.
GenBankAP0051671e-78AP005167.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17.
GenBankAP0149631e-78AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-78CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233791.15e-98WUSCHEL-related homeobox 11
SwissprotB8B6443e-68WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I73e-68WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLI1GR171e-96I1GR17_BRADI; Uncharacterized protein
STRINGBRADI1G17420.12e-97(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.22e-31WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]