PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G019300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 240aa    MW: 25639.2 Da    PI: 7.899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G019300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12249454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +h ++Er+RR+++N+ +  Lr+l P +   + k+ + a+i   Av++I++L
  Brast06G019300.1.p  2 SHIAVERNRRRQMNEHLKALRSLTPAL---YVKRGDQASIIGGAVDFIREL 49
                        89*************************...9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.30E-10154No hitNo description
PROSITE profilePS5088814.939149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.57E-15175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKA LRSLTPALYV KRGDQASIIG GAVDFIRELH VLLEALQANK  60
RRRRLLSNPL LPPPSTPPST PSPRSLLSSC NTNSSSSPGS GSGSGGSNNS GGGGAIKELA  120
ACCSSAAAEV EARISGANLL LRTLSSRAPP GRAARLVGLL QGLHLDVLHL NISTLEDTVL  180
HSFVLQIGLE CQLSVEDLAF EVHQTFCCDQ YQQQDHHGQQ QQLLLELPIA AVHGDIMIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964KRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G019300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752251.11e-116transcription factor MUTE
TrEMBLI1GRC81e-114I1GRC8_BRADI; Uncharacterized protein
STRINGBRADI1G18400.11e-115(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-27bHLH family protein