PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G070500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 233aa    MW: 23137 Da    PI: 8.9848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G070500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001387109123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ Cgk++ +   L  H  +H
  Brast06G070500.1.p  87 YECSVCGKVYASYQALGGHKTSH 109
                         99********9999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.02E-885109No hitNo description
SMARTSM003550.0487109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.03487114IPR007087Zinc finger, C2H2
PfamPF139125.6E-1387111IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576678.02E-8139166No hitNo description
PfamPF139124.5E-12143168IPR007087Zinc finger, C2H2
SMARTSM003550.5144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203144166IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDPSASIVEE APRAKSPVPP PPSPPRMDSW GARGGRGSRR RGAGSGSGGG AESEEEYLAL  60
CLVMLARGVR GDVKGAGAAP AAATKGYECS VCGKVYASYQ ALGGHKTSHR KPPTPQPPAA  120
QAQAASEEAA PGAAVVAAAE AKVHRCSLCL RTFPSGQALG GHKRLHYEGG SGGGDGTTKE  180
AGAKAKAAAA LLRDFDLNLP AAAPGTAGGD DAEAESAPPE AKRARLVLLA AV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G070500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083205e-44AK108320.1 Oryza sativa Japonica Group cDNA clone:002-141-H01, full insert sequence.
GenBankAP0051495e-44AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149635e-44AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126155e-44CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560019.14e-71zinc finger protein 36
TrEMBLI1GSU79e-70I1GSU7_BRADI; Uncharacterized protein
STRINGBRADI1G22940.12e-70(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.18e-23C2H2 family protein