PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G072400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 603aa    MW: 65415.1 Da    PI: 6.2322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G072400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.67.2e-952026012374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL+ecA+av+s+d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++++ +++  +   f+e+sP+  
  Brast06G072400.1.p 202 SQLLMECARAVASRDSTRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAATDRNTSFDSTRRVALKFQELSPWSS 292
                         589************************************************************9999986555555455555********* PP

                GRAS  93 fshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAe 170
                         f+h++aN aIle++ ++      +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+ ++s+       ++ ++e+g+r++kfA+
  Brast06G072400.1.p 293 FGHVAANGAILESFLEAaaasepQRLHILDLSNTFCTQWPTLLEALATRSpDDTPHLSITTVHVSSSSaasspaVQRVMREIGQRMEKFAR 383
                         ************987766777789*************************9899**********988878999999999************* PP

                GRAS 171 elgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...... 251
                          +gvpf+f+++++  +l++l+l++L++++      +aVn+v +l  +       + +r e+   +++l P+vv+vve+ead  ++      
  Brast06G072400.1.p 384 LMGVPFRFRAVHHAgDLAELDLDALDLREggaTTGIAVNCVNSLRGVG------ARRRGEFAASLRRLGPRVVTVVEEEADFVAAasddha 468
                         **********97767**************6555568********9998......556789*******************988444477888 PP

                GRAS 252 .....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et++ W +rl+ aGF+pvp+s+++a+++
  Brast06G072400.1.p 469 sdeeaAFLRVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAAAWARRLRCAGFSPVPFSDDVADDV 558
                         88899*************************************.************************************************ PP

                GRAS 338 klllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                         ++llr++  +g+++ +         + ++l Wk++pLv++SaWr
  Brast06G072400.1.p 559 RSLLRRYR-EGWSMRDAgaedspaGAGVFLQWKEQPLVWASAWR 601
                         *******9.88888844344466445566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.02175575IPR005202Transcription factor GRAS
PfamPF035142.5E-92202601IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDTLFRLVSL QATTEQQQQQ QSASYNSRST TSSGGSRSSS HHTTASYSYY PHHSNSGSGS  60
GGQPQQYYYS QQQQQQPQQY YLEPYHEECG GGNAHQDHQQ QQHQHHQQQQ QLYMDEDFSS  120
SSSSRHLGGH HGGQPSSTPP LSSTTSSTAA AGHALFEPAE LSFPPDLNLD FSSPASSSGA  180
GAGGIAAASA SSPAVGGGRW ASQLLMECAR AVASRDSTRV QQLMWMLNEL ASPYGDVEQK  240
LASYFLQGLF ARLTASGPRT LRTLAAATDR NTSFDSTRRV ALKFQELSPW SSFGHVAANG  300
AILESFLEAA AASEPQRLHI LDLSNTFCTQ WPTLLEALAT RSPDDTPHLS ITTVHVSSSS  360
AASSPAVQRV MREIGQRMEK FARLMGVPFR FRAVHHAGDL AELDLDALDL REGGATTGIA  420
VNCVNSLRGV GARRRGEFAA SLRRLGPRVV TVVEEEADFV AAASDDHASD EEAAFLRVFG  480
EGLRFFSAYM DSLEESFPKT SNERLALERG AGRAIVDLVS CPASESMERR ETAAAWARRL  540
RCAGFSPVPF SDDVADDVRS LLRRYREGWS MRDAGAEDSP AGAGVFLQWK EQPLVWASAW  600
RP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-16019660282474Protein SHORT-ROOT
5b3h_B1e-1611746022420Protein SHORT-ROOT
5b3h_E1e-1611746022420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G072400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562791.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A0Q3GWS30.0A0A0Q3GWS3_BRADI; Uncharacterized protein
STRINGBRADI1G23060.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-127GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]