PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G076900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26185.4 Da    PI: 7.3262
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G076900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-1958111356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++++eq+e Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Brast06G076900.1.p  58 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 111
                         45589***********************************************99 PP
2HD-ZIP_I/II115.72.8e-3758147291
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a++a   ++++Le+ev +L+e+l
  Brast06G076900.1.p  58 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKHAHEAAILHKCHLENEVLRLKERL 147
                         9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.9E-1756117IPR001356Homeobox domain
CDDcd000862.96E-1658113No hitNo description
Gene3DG3DSA:1.10.10.603.9E-1858111IPR009057Homeodomain-like
SuperFamilySSF466891.28E-1658112IPR009057Homeodomain-like
PfamPF000462.7E-1658111IPR001356Homeobox domain
PROSITE profilePS5007116.00158113IPR001356Homeobox domain
PRINTSPR000311.2E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.2E-593109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDKQELFASY YVDTSFLGAN GAAAAQGERP RARRRRRRAA AAARCDDVDG GSLLLDPKKR  60
RLSDEQVEML ELSFREERKL ETGRKVHLAA ELGLDPKQVA VWFQNRRARH KSKLLEEEFA  120
KLKHAHEAAI LHKCHLENEV LRLKERLGVI EEEVRRLRSA GSCHAASGDG AAHHGSPSSS  180
FSAGTCHQQQ QPGLSGGADV MPGNDDLMTM YVPDAEYGGP YADTNVAEWF SLYGLM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12837RPRARRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G076900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218891e-139AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence.
GenBankAY5590471e-139AY559047.1 Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562820.11e-143homeobox-leucine zipper protein HOX14
SwissprotA2YN175e-85HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
TrEMBLI1GT021e-142I1GT02_BRADI; Uncharacterized protein
STRINGBRADI1G23460.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-39homeobox protein 40