PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G084400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 167aa    MW: 17927.4 Da    PI: 6.5009
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G084400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY149.92.4e-46131626167
               YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                          +e++ yvqC+fC+til+vsvP + l+k+v+v+CG C+ +lsv++a +    +a   ++       l+el+v+    +  +e++   ++  
  Brast06G084400.1.p  13 LPERLGYVQCKFCTTILLVSVPCSNLLKMVAVQCGRCAGVLSVSVASSPSPAPAPPSVEL-----PLQELGVDPPPREWSDESTGDDEEG- 97 
                         589*******************************************99999999997444.....3455555554433333222222221. PP

               YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                               e e  e+  +  v++PP ++qr Psayn+fikeei+rika  P+i+h+eafs+aaknWah+P+i 
  Brast06G084400.1.p  98 ------EGEAVESNAAATVNKPPVRKQRTPSAYNCFIKEEIKRIKALEPNITHKEAFSTAAKNWAHLPRIQ 162
                         ......22333344456799*************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.0E-5014163IPR006780YABBY protein
SuperFamilySSF470951.03E-6110159IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.0E-4117159IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSSTSLVHLE LGLPERLGYV QCKFCTTILL VSVPCSNLLK MVAVQCGRCA GVLSVSVASS  60
PSPAPAPPSV ELPLQELGVD PPPREWSDES TGDDEEGEGE AVESNAAATV NKPPVRKQRT  120
PSAYNCFIKE EIKRIKALEP NITHKEAFST AAKNWAHLPR IQHRGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G084400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740191e-53AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560056.11e-87protein YABBY 7
SwissprotA2PZN81e-62YAB7_ORYSJ; Protein YABBY 7
TrEMBLA0A0Q3RRF52e-86A0A0Q3RRF5_BRADI; Uncharacterized protein
STRINGOB07G25220.13e-65(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.17e-32YABBY family protein