PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G087300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 666aa    MW: 71174.7 Da    PI: 7.0026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G087300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08276298426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C++f+r G C+ Gd+C F+Hg
  Brast06G087300.1.p 276 VPCPNFRRPGGCPSGDNCEFSHG 298
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1263144IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.0E-1463145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.66165141IPR020683Ankyrin repeat-containing domain
SMARTSM002481906594IPR002110Ankyrin repeat
PfamPF127962.3E-965135IPR020683Ankyrin repeat-containing domain
CDDcd002046.41E-1267144No hitNo description
SMARTSM002483.9E-4101133IPR002110Ankyrin repeat
PROSITE profilePS5008812.396101136IPR002110Ankyrin repeat
PROSITE profilePS5010314.126272300IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5273301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6276299IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4305337IPR000571Zinc finger, CCCH-type
SMARTSM0035621308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MGDLPDPARA QVAAGGRRDK LAALLELAAA DDVDGMREAL ELAGEEAAEL ADEVGLWYGR  60
SKAYEPRTPL MVAATYGSAR VVSLLLGLTG YVDVARRPGV DGFTALHCAA SGGSSNAVPV  120
VKMLLDAGAD PATTDCAGRF PADVIRAPPA SPDALGDLEM LLGRRRALAV ATSAASGASS  180
PPLSSSPDDE GNRSPSSRSS SLSPITVDRG KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF  300
ESWLHPTQYR TRLCKEGAAC ARRICFFAHD EEELRHVPHN SGAGLLSPRA TSSVDMSAAT  360
VLGLLPGSPR HFGPPPGSPS AGSNGGGTAA HWLQGSRLRS SFNARDATVE DLGLLLDWES  420
QYLGALCLPS SSRPQPRLST GLSVRPTAIA TSTLEDMYAS DLAMSPRFTS DQAHPVYSPA  480
HKSAMLNKLH QQKGLLSPVN TNRLYSPRGL DPSALVHSPI GGMSPRSPRV MEPTSPLSSR  540
FGASHTQREM FEQFASLNKH QLPSTGSPRN SNSSWGNMGS PMGKVDWGVD GDELVRLRRP  600
EQSGLAEKEP DVSWGQSLNG RRVEMLGNAG SLASGSTNRI DWNNQADLLD QTAIGAWLEQ  660
HMDQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G087300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562905.10.0zinc finger CCCH domain-containing protein 50
RefseqXP_024312449.10.0zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLI1GTB10.0I1GTB1_BRADI; Uncharacterized protein
STRINGBRADI1G24270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-139CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]