PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G100500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23566.2 Da    PI: 9.7393
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G100500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-171051243
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        ri++ + r  tf kRr g++KKA+EL +LC+ +++vi++++ 
  Brast06G100500.1.p 10 RIQDPTARRATFRKRRDGMMKKASELATLCNLKACVIVYGEG 51
                        8999************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.077150IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-22160IPR002100Transcription factor, MADS-box
CDDcd002663.89E-27285No hitNo description
PRINTSPR004046.4E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-23394IPR002100Transcription factor, MADS-box
PfamPF003192.8E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-102338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MARKKVNLRR IQDPTARRAT FRKRRDGMMK KASELATLCN LKACVIVYGE GDTQSHVWPS  60
VAEAKPILER FKAMPELEQY KRTMNQEAFL RQRVDKLREQ NQRLQRENHQ RETMCLLHKA  120
MLGQLPSSVG LTIEEVTSVG WMAKSYLKSI GDCIAERTRQ AGVQAPPATD IPSNDMMSTM  180
GDPSLEEYLQ MPQQEMWIDN VRIQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLRRIQDPTARRATFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G100500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313046.11e-121agamous-like MADS-box protein AGL80
TrEMBLA0A2K2DL161e-120A0A2K2DL16_BRADI; Uncharacterized protein
STRINGGRMZM5G839969_P013e-57(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-29AGAMOUS-like 80