PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G116200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 358aa MW: 35931.5 Da PI: 7.9981

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G116200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.6e-39	44	103	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ Brast06G116200.1.p 44 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 103 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	40	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	46	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MAAGAGGAAA AAAAVQHAGP AAGRSGGSSS AGGGGGGAAP DPRAEALRCP RCDSANTKFC 60 YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RSRSSGGGGG RVVVSGSGGP 120 NAAGSAQSSS SLPQPSLSSA LQGLHHGSSS LASLLLGSAG GGAGADHLGL FHQAMQSVVS 180 DNAAAYEMHS QQQQQQAQVD QLLGLGYGSQ IQMNKPWQQL HDGLFDGFYA PLLSGCSIVP 240 GLEELHVKAE ATAGEHHHTQ HKKPADGEQQ SGGSWGEQQH PNSSSSNVEA CNNIMASSDA 300 LMAAMNPAAA VSSSNAATAP PTTVSSSQLM YWGNGGGAPA AWPDIGANCG SSIATFF*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MAAGAGGAAA AAAAVQHAGP AAGRSGGSSS AGGGGGGAAP DPRAEALRCP RCDSANTKFC  60
YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RSRSSGGGGG RVVVSGSGGP  120
NAAGSAQSSS SLPQPSLSSA LQGLHHGSSS LASLLLGSAG GGAGADHLGL FHQAMQSVVS  180
DNAAAYEMHS QQQQQQAQVD QLLGLGYGSQ IQMNKPWQQL HDGLFDGFYA PLLSGCSIVP  240
GLEELHVKAE ATAGEHHHTQ HKKPADGEQQ SGGSWGEQQH PNSSSSNVEA CNNIMASSDA  300
LMAAMNPAAA VSSSNAATAP PTTVSSSQLM YWGNGGGAPA AWPDIGANCG SSIATFF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G116200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966121	3e-83	EU966121.1 Zea mays clone 291888 hypothetical protein mRNA, complete cds.
GenBank	KJ727686	3e-83	KJ727686.1 Zea mays clone pUT5625 C2C2-DOF transcription factor (DOF34) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003560166.1	1e-140	dof zinc finger protein DOF1.4
TrEMBL	I1GU36	1e-139	I1GU36_BRADI; Uncharacterized protein
STRING	BRADI1G26570.1	1e-140	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Brast06G116200.1.p