PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G139500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 265aa    MW: 28594.5 Da    PI: 4.4691
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G139500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.81.6e-22178221245
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r  + ++e
  Brast06G139500.1.p 178 LEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQLVVE 221
                         59***********************************9998875 PP
2QLQ49.61.2e-17111146237
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          FTa Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Brast06G139500.1.p 111 LFTAIQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 146
                         6*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-7110146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.126111146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.3E-11112145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166721.964177221IPR014977WRC domain
PfamPF088794.4E-19179216IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAEGEAKET NHVGGSGGEN TLEAAAEEVM HEAGGQESSQ EPEGEGEEEE ENRDREGKYD  60
DAGKEDNGCK EIVLVEDPAM VEDPEEAAAT AALQEEMRVL VASVPEGAGA LFTAIQLQEL  120
EQQSRVYQYM AARVPVPTHL VFPIWKSVTG ASSEGAQNYP TLMGLATLCL DFGKSPELEP  180
GRCRRTDGKK WRCWRKTIPN EKYCERHMHR GRKRPVQLVV EDDEPDSAST SSSGKVTEGG  240
KKTDNKSSSS KKPAVAAPAT VEST*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G139500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563152.11e-173growth-regulating factor 11
SwissprotA5HEG91e-128GRF10_MAIZE; GRF-interacting factor 10
TrEMBLI1GUN61e-172I1GUN6_BRADI; Uncharacterized protein
STRINGBRADI1G28400.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]