PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G165200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 408aa MW: 47280.7 Da PI: 6.8707

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G165200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.2e-21	187	278	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 Y++YA+ GF +r+++++ ++ge+ +++fvC++ gk+++ k++ + +r++++++rtgC+a++k+k++ +++ v+++++eHn Brast06G165200.1.p 187 HYENYARWNGFGTRIDYQRPI-KSGETSRAQFVCYNAGKNKKAKEDnqrpesVVPKRKRSTTNRTGCHARMKIKLD-GATYIVEQFDEEHN 275 6*************99988.7888************999999999888999999************.9*********** PP FAR1 87 Hel 89 H++ Brast06G165200.1.p 276 HPV 278 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-18	187	279	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
ASRNRARVSD LARQQVSSFF RGRERVRALA RERKLEPKRT QERRMENVEG GTDENFRTWG 60 FSSLTPNDGL AENFDGLHSS YPLLPLLQQV ISLSQGQHPT EHQENGPNPI QNVLHPELTQ 120 GTNTMDGLER AVDVGEGMLA PAAMLHRASD ERADDGGNNE DDDDGISAPK KPEDNMRFES 180 IKAAQDHYEN YARWNGFGTR IDYQRPIKSG ETSRAQFVCY NAGKNKKAKE DNQRPESVVP 240 KRKRSTTNRT GCHARMKIKL DGATYIVEQF DEEHNHPVIK KFNLTKYLRS HRHMPREERH 300 FVKLLHDCNL RTSQMMQLLS HLHGTLDDLT CTRTDMANFR AALWMEHCVM DMQHMLQYFE 360 QLKKEDKDFF YSFELDDEDR VINLYWVDGE AKRSYKYYND CISFDTT*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

ASRNRARVSD LARQQVSSFF RGRERVRALA RERKLEPKRT QERRMENVEG GTDENFRTWG  60
FSSLTPNDGL AENFDGLHSS YPLLPLLQQV ISLSQGQHPT EHQENGPNPI QNVLHPELTQ  120
GTNTMDGLER AVDVGEGMLA PAAMLHRASD ERADDGGNNE DDDDGISAPK KPEDNMRFES  180
IKAAQDHYEN YARWNGFGTR IDYQRPIKSG ETSRAQFVCY NAGKNKKAKE DNQRPESVVP  240
KRKRSTTNRT GCHARMKIKL DGATYIVEQF DEEHNHPVIK KFNLTKYLRS HRHMPREERH  300
FVKLLHDCNL RTSQMMQLLS HLHGTLDDLT CTRTDMANFR AALWMEHCVM DMQHMLQYFE  360
QLKKEDKDFF YSFELDDEDR VINLYWVDGE AKRSYKYYND CISFDTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G165200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314048.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A0Q3K7S7	1e-151	A0A0Q3K7S7_BRADI; Uncharacterized protein
STRING	BRADI2G31180.1	1e-166	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	7e-24	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Brast06G165200.1.p