PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G173500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 220aa    MW: 23713.8 Da    PI: 8.1437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G173500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-172778155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++ GVr+++ +grWvAeI+       ++ r++lg+f tae+Aa+a+++a+  l+g
  Brast06G173500.1.p 27 CKFVGVRQRP-SGRWVAEIKGT---TaHKIRVWLGTFETAEDAARAYDEAACLLRG 78
                        799*******.7******6662...2456**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-132778IPR001471AP2/ERF domain
CDDcd000181.73E-282785No hitNo description
SuperFamilySSF541711.18E-192887IPR016177DNA-binding domain
SMARTSM003804.7E-352892IPR001471AP2/ERF domain
PROSITE profilePS5103219.9152886IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-282887IPR001471AP2/ERF domain
PRINTSPR003675.3E-82940IPR001471AP2/ERF domain
PRINTSPR003675.3E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MELQFQQQQQ PECEAKGRRS SSSNSKCKFV GVRQRPSGRW VAEIKGTTAH KIRVWLGTFE  60
TAEDAARAYD EAACLLRGSN ARTNFSSSSP PDSPLASRIR TLLLTHKKIK KHAAPALSSS  120
ISFAMSSDSR QQCVAGESYM ACELIDRFDQ QPWPAAADVM RMGKKEDCGS ASASPGAAAA  180
AMSGVIQEQD GGFDIGNDPC GSLWDLPPIC QLSCRSVMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1528851471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G173500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228242.11e-100ethylene-responsive transcription factor RAP2-11
TrEMBLI1H2S32e-99I1H2S3_BRADI; Uncharacterized protein
STRINGBRADI1G54450.11e-100(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-23related to AP2 11