PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G178200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 453aa    MW: 49812.4 Da    PI: 5.7653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G178200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.8e-14268314455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h   Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Brast06G178200.2.p 268 NHVLQERKRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 314
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.098264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-19265333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.29E-14268318No hitNo description
PfamPF000102.0E-11268313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17268329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.10E-4381445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSIFMDQQDI QMIPTISEHS TSDKICHMYQ QSFQTQRKIH AGQEDEMEHD DDDIGAECAS  60
GSGNTAGRNY SQDTPLNIVG NTDDQATPNA GSSELMQLEM PERVRDGCSS NLDDEIQMLM  120
VCQNSDVDQS DFQRQDEPSQ SWHFLYEELC SGYPQSSGEN QDIVLQLENA HYAETVMSIL  180
QSNTRRQAAG PSTRSYVAAS HQSSFSTWHP TMLQQGRTAT GAGGTTPQRM LRSVLFNNAA  240
ASGHGKPPED IPRGGDGGPR READFSANHV LQERKRREKL NERFIILRSL VPFVTKMDKA  300
SILGDTIEYV KQLRSRIQDL ESSSTRQQQQ VVHGCGGLTA AADQARSAKR KLATREGSSA  360
SSSSAPPSAE VQVSIIESDA LLELRCPDRR GLLLRIMLAL QDQLRLDLTA VRASSDGGVL  420
LAELRAKVRE VHGRRSSISE VKRAIHLIIS SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-14268331871Transcription factor MYC2
5gnj_B5e-14268331871Transcription factor MYC2
5gnj_E5e-14268331871Transcription factor MYC2
5gnj_F5e-14268331871Transcription factor MYC2
5gnj_G5e-14268331871Transcription factor MYC2
5gnj_I5e-14268331871Transcription factor MYC2
5gnj_M5e-14268331871Transcription factor MYC2
5gnj_N5e-14268331871Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277ERKRRE
2273278RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G178200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230011.10.0basic helix-loop-helix protein A isoform X2
TrEMBLA0A2K2DRD10.0A0A2K2DRD1_BRADI; Uncharacterized protein
STRINGBRADI1G54070.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-43bHLH family protein