PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G187200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 290aa    MW: 30951.1 Da    PI: 6.6839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G187200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08138182554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Brast06G187200.1.p 138 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 182
                         99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.35E-10131187No hitNo description
SuperFamilySSF474596.02E-15131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-14135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6138182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAGQPPPGAE DDFLDHFFSI PSSFPAAGQG GAPAADGDHH PFPLALSLEA AAEASGGGSR  60
RLQDGPGGAR ADRDPVQLAG LFAPVFAGAA PHLRPAPPPQ VFHAQPRLGE GAMVPQLHQP  120
PAPRPKQRAR RGQATDPHSI AERLRRERIA ERMRALQELV PNTNKTDRAA MLDEILDYVK  180
FLRLQVKVLS MSRLGGAGAV AQLIADIPLS VKGEEAGDSG GKQQIWEKWS TDGTEKQVAK  240
LMEEDIGAAM QFLQSKALCM MPISLAMAIY DTQHLQDGHS MKPEPNSHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G187200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561348.11e-179transcription factor UNE12 isoform X1
SwissprotO227681e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLI1H3291e-177I1H329_BRADI; Uncharacterized protein
STRINGBRADI1G55427.11e-178(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]