PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G213100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 533aa    MW: 58176 Da    PI: 4.5971
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G213100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.61.5e-09197223127
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekA 27 
                         kpr+ Wt eLH +Fvea+++LG  + A
  Brast06G213100.1.p 197 KPRMTWTRELHGKFVEAINRLGTDNSA 223
                         79*******************765554 PP
2Response_reg486.8e-17131301109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHT......TTSEE..EEEESTT CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireee......pklpi..ivvtahg 81 
                         vl +d++++ +++l++ l++ +y +v+ a d++ +l+ l + +  +Dl++  +  pg dG++ll++ + +       ++++i   v++a++
  Brast06G213100.1.p  13 VLAIDEDRVCLKILEETLRRYNY-DVTPAMDAQTVLRALGKAKdpFDLVISEVHVPGTDGFKLLRHFAVKMgvpvvaESVNIchAVLSANE 102
                         7899*******************.***************776669**********************555448777655666336999*** PP

                         THHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                         + e+++e+l+ Ga ++l+Kp+  e+l +
  Brast06G213100.1.p 103 DTETVKEVLSSGACRYLAKPVRAEQLKN 130
                         *************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.9E-3010150No hitNo description
SuperFamilySSF521723.42E-2410144IPR011006CheY-like superfamily
SMARTSM004481.9E-1611132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.68712136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1313130IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.15E-1714136No hitNo description
Gene3DG3DSA:1.10.10.601.0E-8195224IPR009057Homeodomain-like
SuperFamilySSF466891.97E-5195248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MAAANELWAG MRVLAIDEDR VCLKILEETL RRYNYDVTPA MDAQTVLRAL GKAKDPFDLV  60
ISEVHVPGTD GFKLLRHFAV KMGVPVVAES VNICHAVLSA NEDTETVKEV LSSGACRYLA  120
KPVRAEQLKN IWQYVLRRKN EARNHKSSGN ANVDQRVQSG IAVAEAEQGA KSARKNLRRK  180
KNDEDGSGEN EENSGKKPRM TWTRELHGKF VEAINRLGTD NSANTLARII LDTNQGKASS  240
HLDYYFENIP DEGILEPVNQ FRVQPPQLAS HSSVLMNAPA TNLVGALGDT SKFPYLAGNC  300
NNSFWQSAVS SKFPDILHKD GSSLGSSKAK ANIPKINQLA SFAGTSSGQI QMVLNEPQNP  360
MAALIGNTTP VARFSQQMAP FNIASNTSPV EMLNGNFAPG STSTMSLPSL QTGNSVMLTQ  420
MVNDLSNNST LPNIEADSFV VPTQMLNGGD VVDALPVQES TADQQALDGQ LNDNNEFSMD  480
DIFSLVDQQN SIEDDDLLRN FTEDDALKNF SEDDALLKDF TEDDAFLNGD WF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G213100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311819.12e-90two-component response regulator ORR24
TrEMBLA0A0Q3K8R40.0A0A0Q3K8R4_BRADI; Uncharacterized protein
STRINGBRADI5G12160.14e-89(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4991522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-40response regulator 12