PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G214300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 715aa    MW: 78774.7 Da    PI: 5.4957
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G214300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.6e-09641011856
                         HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +F++++ p++     L ++lgLt +qVk+WFqNrRa +k
  Brast06G214300.1.p  64 VFQECPFPDEILQLNLGNSLGLT-QQVKIWFQNRRAAQK 101
                         79********************8.59**********998 PP
2START80.83.3e-2621243014205
                         HHHC-TT-EEEE..EXCCTTEEEEEEESSS.SCEEEE..EEEECCSCHHH.HHHHHHCCCGGCT-TT-S...EEEEEEEECTT.....EEE CS
               START  14 alaeepgWvkss..esengdevlqkfeeskvdsgeal..rasgvvdmvla.llveellddkeqWdetla...kaetlevissg.....gal 91 
                          +++ep+W      e +n++++ + + ++ + +g+a+  + +++ +mv a +lv++l+d +  W+++++   +  t  +i +      + +
  Brast06G214300.1.p 212 RTLGEPMWLPTIdgEVLNNQTYNTMIRPDPTLTGFAMdgTRKTAMIMVKAdNLVRILMDPA-HWSKMFPgivAGVTSSHIVNPkasphELI 301
                         4789999999998877888888888888777777777443456666666658999999888.*******9985555555555467777*** PP

                         EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE.............-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
               START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd.............seqkppe.sssvvRaellpSgiliepksnghskvtwv 167
                         qlm+ael +l p vp  ++ f+R++ q +  +w++vdvS+d             se++  +  + ++ +++lpSg+lie+++ng++k+tw+
  Brast06G214300.1.p 302 QLMNAELRVLVPRVPlVKVKFARQCLQVQPNVWAVVDVSIDgvlgddggrmvgiSESNGGSfPATYIACRMLPSGCLIEEMKNGYCKITWM 392
                         ****************************************8443333333333334444447789************************** PP

                         E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          h+ ++++ ++ l  sl+++g+a ga +w+  l+rqce
  Brast06G214300.1.p 393 VHAGYDKSKIPPLHLSLLHTGQALGACRWLNSLKRQCE 430
                         *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.001657107IPR001356Homeobox domain
SuperFamilySSF466891.67E-763105IPR009057Homeodomain-like
CDDcd000862.12E-963103No hitNo description
PfamPF000461.4E-664101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-864109IPR009057Homeodomain-like
PROSITE profilePS500718.85965103IPR001356Homeobox domain
SuperFamilySSF559611.99E-14199430No hitNo description
SMARTSM002340.0063201431IPR002913START domain
PfamPF018521.7E-19212430IPR002913START domain
PROSITE profilePS5084823.746216434IPR002913START domain
SuperFamilySSF559613.3E-5523656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDDGEGQKHD CDFLDFEQLL EDTLGYEMDA LSVEPDYANM WNDIDGVHAA APDQNNNEIN  60
QTSVFQECPF PDEILQLNLG NSLGLTQQVK IWFQNRRAAQ KTKVAQRESE FLREEKEMLE  120
DERRNINVVI HDKDKRCLRC RGRGPRAYNG DTPEKHRLLA ENTKLKEELL QAFALLSVLN  180
SHCATSGGNS GSPTMLLDHV SRASEEFMSL VRTLGEPMWL PTIDGEVLNN QTYNTMIRPD  240
PTLTGFAMDG TRKTAMIMVK ADNLVRILMD PAHWSKMFPG IVAGVTSSHI VNPKASPHEL  300
IQLMNAELRV LVPRVPLVKV KFARQCLQVQ PNVWAVVDVS IDGVLGDDGG RMVGISESNG  360
GSFPATYIAC RMLPSGCLIE EMKNGYCKIT WMVHAGYDKS KIPPLHLSLL HTGQALGACR  420
WLNSLKRQCE YFAFLHSGPL IPPLTNPVLA AMLPDQGRKS VLASAQQMMM NFYKAMCDSA  480
GKTWSTVDEW PGDCGVAGEE KLHLAVRFVT SLAAIYNGDL QTGTQLILSA MTTVWLPGIP  540
ARRVFEYLCD GNRRGEWDTF VANGEPMQEE LRITTGQFHG NAVSIFRAIA SDGTNYNNNN  600
NKLILQEAYT DTSSMLVVYV PVDEQSMKDA MNGGGCASFS TPPSGFAVIP DGVNQQTSPW  660
SSSGAIVTAM YQTLPSSASP QNLTLDTVNN ISSLLYHAIN KIKRALHAEV AAPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G214300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314342.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A0Q3HE870.0A0A0Q3HE87_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.13e-92HD-ZIP family protein