PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G223000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 367aa    MW: 40740 Da    PI: 5.8044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G223000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.8e-131764349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                        i +++ r +tf kRr g++K A  LS+L++a+vav++    +gk++ +
  Brast06G223000.1.p 17 IRDNRERDITFYKRRGGLFKSAADLSILTGARVAVVLETlDNGKMHSF 64
                        88999******************************9865367888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-7767IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.928768IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-5929IPR002100Transcription factor, MADS-box
CDDcd002668.70E-151086No hitNo description
SuperFamilySSF554551.18E-141178IPR002100Transcription factor, MADS-box
PfamPF003191.4E-161764IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-52944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPRGVPRRER RLGAQYIRDN RERDITFYKR RGGLFKSAAD LSILTGARVA VVLETLDNGK  60
MHSFGTPSAD RVVDAFLSGV PPIGPCTDQA TSARIAFLQS ELASLDMENT MEEKKTKLST  120
KLIKEIQDGN PGMVANLLFS RQEDLNLEDL IKLFNEFSCV QQHIARRVPP LHRVREQNGP  180
SMSANHPLPR VPSWGLMETI PLPLHSSSPD LLRQQPLRPA PIPSAPQHMM APNFPVQVPE  240
TLQPMPPAMS QLIPNLLQDL PSPFQCHLQN YTSRNNTVEP SQNNTVPNST FEHSELASPL  300
LVFTGGNNFD IADPFENEHW NFTLSDQPHD SSFLEMAGTD VGQAEMGNGG WFNEPPEPSS  360
RRGDVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G223000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230084.10.0uncharacterized protein LOC104582323
TrEMBLA0A2K2DS541e-168A0A2K2DS54_BRADI; Uncharacterized protein
STRINGBRADI1G57870.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.19e-10AGAMOUS-like 97