PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G246100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 259aa    MW: 28366.1 Da    PI: 9.6512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G246100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000135880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Brast06G246100.1.p 58 YTCTFCRREFRSAQALGGHMNVH 80
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-65585No hitNo description
PfamPF139122.0E-55881IPR007087Zinc finger, C2H2
SMARTSM003550.00665880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1575885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAANYYWAGM WGGGASTTTT TTTTTLVRSS FPAAAEAPSW EEQAFARDVG CVWPPRSYTC  60
TFCRREFRSA QALGGHMNVH RRDRARLRQC ASPPAPAPDD LHHHQQQLAI IPSPKSPQAA  120
TTMTTTTTRA SPNSSYISTI LAAAADKEII ISNNSNTNKV FLSMPVFDAT ARLDQSAADE  180
ERICRKRRRV DQPPPATTMV ALPFFVRRRS PPPVSCEREA DHHGDAKVPK LMVSSPSRPL  240
HLALGRQEVD LELRLGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135380229superman protein
2l1o_A3e-135380229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188RKRRR
2185189KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G246100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330083e-36AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence.
GenBankAP0149673e-36AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126193e-36CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230127.11e-144probable transcriptional regulator RABBIT EARS
TrEMBLI1H4I81e-143I1H4I8_BRADI; Uncharacterized protein
STRINGBRADI1G59750.11e-144(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-25zinc-finger protein 10