PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G005200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 181aa    MW: 19061.7 Da    PI: 10.7925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G005200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B387.41.2e-2734133199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+kv tpsdv+k++rlv+pk+ ae+h      g   ++   l++ed +g+ W ++++y+++s++yv+tkGW+ Fv++ +L +gD+v F+  
  Brast07G005200.1.p  34 FDKVVTPSDVGKLNRLVVPKHLAEAHfvvpgsG--GRGAALLRFEDGKGKAWCFRFSYWGSSQSYVMTKGWSAFVRDRRLAAGDTVSFS-- 120
                         89***************************9653..447789************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                          r +++l++  +r+
  Brast07G005200.1.p 121 -RAGGRLFIDCRRR 133
                         .5678889988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-3230135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-2332132No hitNo description
SuperFamilySSF1019366.15E-2632127IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-2434133IPR003340B3 DNA binding domain
PROSITE profilePS5086314.01534134IPR003340B3 DNA binding domain
SMARTSM010192.2E-1634134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVLTAAARVS GGEGGVSGGG GGNGVCGGVR EHMFDKVVTP SDVGKLNRLV VPKHLAEAHF  60
VVPGSGGRGA ALLRFEDGKG KAWCFRFSYW GSSQSYVMTK GWSAFVRDRR LAAGDTVSFS  120
RAGGRLFIDC RRRGSAAGST TAMASRRLRL FGVDVEVADE PLDRSAARLE LVNLRLGLND  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-44301334113B3 domain-containing transcription factor NGA1
5os9_B8e-44301334113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G005200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046984e-35AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149644e-35AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126164e-35CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751764.15e-77B3 domain-containing protein Os06g0107800
SwissprotQ8LMR91e-44Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLI1H1Z31e-75I1H1Z3_BRADI; Uncharacterized protein
STRINGBRADI1G52000.12e-76(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]