PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G008100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 163aa MW: 17811.1 Da PI: 4.8593

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G008100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.5	5.8e-14	48	130	9	96
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 + ++++ +v+p +f ++ + + grsW++++ ++ + + + W +F+ +n+L++gD +vF+l++ ++e+v+ v Brast07G008100.1.p 48 SRTQLRDMVIPARFQRRLPAR--R--AAAVVRCAGRSWTMNY--CGDTKVKRFDTAWAHFAADNRLQAGDACVFELVSGaGGREMVFEV 130 55566779****9888533..3..5778899*****..666656668999*****************99776888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-18	36	134	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.3E-16	38	132	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.616	40	136	IPR003340	B3 DNA binding domain
CDD	cd10017	8.17E-13	41	134	No hit	No description
SMART	SM01019	2.6E-5	42	136	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-12	47	129	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MESSASWRQL PDVLIVKPAG EIIFPASDEQ HKTTPLSGDH PFFTAILSRT QLRDMVIPAR 60 FQRRLPARRA AAVVRCAGRS WTMNYCGDTK VKRFDTAWAH FAADNRLQAG DACVFELVSG 120 AGGREMVFEV QVLRGGGLPE PEPEEDDGAA NDKPIVIGDE DD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G008100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024317071.1	4e-94	B3 domain-containing protein Os06g0112300
Swissprot	Q9LHY9	2e-35	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	I1H1W1	8e-93	I1H1W1_BRADI; Uncharacterized protein
STRING	BRADI1G51730.1	1e-93	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Link Out ? help Back to Top
Phytozome	Brast07G008100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]