PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G012800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 243aa    MW: 25311.7 Da    PI: 10.1468
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G012800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1979133256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Brast07G012800.1.p  79 RKKLRLSKDQASVLEECFKTHHTLTPKQKLALANRLGLRARQVEVWFQNRRARTK 133
                         788899***********************************************98 PP
2HD-ZIP_I/II117.57.5e-3879167189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e++kr++++l+ +n+rLeke ++Lr+
  Brast07G012800.1.p  79 RKKLRLSKDQASVLEECFKTHHTLTPKQKLALANRLGLRARQVEVWFQNRRARTKLKQTEVDCEHMKRWCEQLAGQNRRLEKELADLRA 167
                         69***********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-1962129IPR009057Homeodomain-like
SuperFamilySSF466893.38E-1865136IPR009057Homeodomain-like
PROSITE profilePS5007116.76375135IPR001356Homeobox domain
SMARTSM003899.4E-1677139IPR001356Homeobox domain
PfamPF000461.0E-1679133IPR001356Homeobox domain
CDDcd000861.68E-1479136No hitNo description
PRINTSPR000315.3E-5106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000315.3E-5115131IPR000047Helix-turn-helix motif
SMARTSM003402.1E-15135178IPR003106Leucine zipper, homeobox-associated
PfamPF021832.5E-8135167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPQGLDLGL SLGLGLVSSR SGGDVAADQE GPAMAAEEER MTSSPGSPAS SGGGSGMKRS  60
AGAGSGDEDD ADGGGMNARK KLRLSKDQAS VLEECFKTHH TLTPKQKLAL ANRLGLRARQ  120
VEVWFQNRRA RTKLKQTEVD CEHMKRWCEQ LAGQNRRLEK ELADLRASSP APPLMATLTV  180
CLSCKRVASS PSSSSPAARA PNAGTGIGMP VAALTGQRQL WCGYRETAGG ASGLAKAVKP  240
AR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G012800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669971e-102AK366997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557217.12e-87homeobox-leucine zipper protein HOX28
SwissprotA2Y9312e-59HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE52e-59HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLI1H1Q44e-86I1H1Q4_BRADI; Uncharacterized protein
STRINGBRADI1G51270.17e-87(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.19e-39homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]