PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G012900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 317aa    MW: 32853.5 Da    PI: 10.2722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G012900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.6e-19138192256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Brast07G012900.1.p 138 RKKLRLSKDQAAVLEECFKTHSTLNPKQKLALANRLGLRARQVEVWFQNRRARTK 192
                         678899***********************************************98 PP
2HD-ZIP_I/II1201.2e-38138228192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e++kr++++l+++n+rLekev+eLr +l
  Brast07G012900.1.p 138 RKKLRLSKDQAAVLEECFKTHSTLNPKQKLALANRLGLRARQVEVWFQNRRARTKLKQTEVDCEYMKRWCEQLADQNKRLEKEVAELR-AL 227
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Brast07G012900.1.p 228 K 228
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-17126188IPR009057Homeodomain-like
PROSITE profilePS5007116.277134194IPR001356Homeobox domain
SuperFamilySSF466891.28E-17136203IPR009057Homeodomain-like
SMARTSM003891.3E-15136198IPR001356Homeobox domain
CDDcd000866.09E-13138195No hitNo description
PfamPF000462.1E-16138192IPR001356Homeobox domain
PRINTSPR000318.1E-5165174IPR000047Helix-turn-helix motif
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
PRINTSPR000318.1E-5174190IPR000047Helix-turn-helix motif
SMARTSM003402.3E-19194237IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-9194228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMARGGGGGG GSLDLGLGLG LGLASQGSLT SSTTTASSSP GSQQQGQHWH AALSSVVAAA  60
DAGAPAARLE FPSSYQQQRY RQQEGGRTST SPESGAALSG VSGGGGGGKR ALERTGSGAS  120
RGGAAVSDED EDGGGGGRKK LRLSKDQAAV LEECFKTHST LNPKQKLALA NRLGLRARQV  180
EVWFQNRRAR TKLKQTEVDC EYMKRWCEQL ADQNKRLEKE VAELRALKAA SAPAAAGHQS  240
SSSSPAATLT MCPSCRRVAT TQQQQQQQCH PKSNAAPLAA GSHCQFFPSA AAAGDRSARQ  300
PAWNGAPPPL VTRELF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186194RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G012900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599891e-124EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557216.11e-116homeobox-leucine zipper protein HOX2
SwissprotQ5VPE37e-82HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U867e-82HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLI1H1Q31e-115I1H1Q3_BRADI; Uncharacterized protein
STRINGBRADI1G51257.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.14e-36homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]