PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G015600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 603aa    MW: 62668.4 Da    PI: 8.3698
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G015600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-29256315159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed ++++ tYeg+Hnh+
  Brast07G015600.1.p 256 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAaGCPVRKQVQRCAEDMSILISTYEGKHNHP 315
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-31241315IPR003657WRKY domain
SuperFamilySSF1182904.32E-26249316IPR003657WRKY domain
PROSITE profilePS5081128.449251317IPR003657WRKY domain
SMARTSM007742.1E-35256316IPR003657WRKY domain
PfamPF031061.2E-25257315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MIKGETWRQV GSHEDRLKGE MKDDHRVSDD SFFKTLQNQS STTKEVIQHD KLASTRAEMG  60
EVRQENERLK TMLSRIIEDH RSLQKHFNDV LQQGREKKVS GRSPADAEET ELVSLSLGTS  120
TSMSSRWYTR EEKSSTIVQG QGRELGLLKI REGAAGISLG LSAGSQLAGA TDRKVPQPDV  180
LLSLSPEGSS EEATTKDADD TTASVEQWPA PSQTAKNSRS GAGAGGTETE DDIAPQAPMV  240
KKARVSVRAR CDAPTMNDGC QWRKYGQKIS KGNPCPRAYY RCTVAAGCPV RKQVQRCAED  300
MSILISTYEG KHNHPLSASA AAMASTTSAA ASMLLSGSIS SSSSSHGPLF PFPTGAGAAA  360
SPSLSFGGLP ATSITAVSSH PTITLDLTSP PPPPPSTASH SHPPFSFSGG NRFFSTSGGL  420
LFNGGGSSRY PPPSTSFSFS GSGASTTAWP AAAGYLSYGL SSSSSSSGAS SYNNNANGNG  480
NGNSIIHGRQ LQLQLQQQRL APVLPQVDTI AKVITSDPGF HTALAAAITS YVGTTAAAAK  540
PVAAPGPGSG GLEWGEHLGL GPASAVARGE ASFLQPSSSG STSGTASMSP AKNREHTLAE  600
GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202563181778Probable WRKY transcription factor 4
2lex_A2e-202563181778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G015600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485559e-85AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229976.20.0probable WRKY transcription factor 61
TrEMBLA0A0Q3HAB20.0A0A0Q3HAB2_BRADI; Uncharacterized protein
STRINGBRADI1G51030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-47WRKY DNA-binding protein 61