PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G020400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 350aa    MW: 38057 Da    PI: 9.0224
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G020400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.5e-2498142145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Brast07G020400.1.p  98 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 142
                         79****************************************986 PP
2QLQ62.98.3e-222761236
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++i+
  Brast07G020400.1.p 27 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPIR 61
                        5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-122662IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4682762IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.7E-162861IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.34698142IPR014977WRC domain
PfamPF088794.0E-2199141IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLSSAAAMGM GGGYHQQQQQ QQRGAAVFTA AQWAELEQQA LIYKYLMAGV PVPPDLLLPI  60
RPHSAAAAFS FAXPAASPFY HHHHPSMSYY AYYGKKLDPE PWRCRRTDGK KWRCSKEAHP  120
DSKYCERHMH RGRNRSRKPV ESKTPSPAHQ SQTQLSAVTS TTRDTEPLQS LGVGAKTHGL  180
SLGGAGSSQM HVDASSYGGK YSLGAKSDVG ELSFFSGASG NTRGFTIDSP ADSPWHSMPS  240
SVPPYQLSKA RDSGLLQGGG FSYSHFEPSQ ELGQVTIASL SQEQGRRSFS GGGGGLMANV  300
KQENQALRPF FDEWPGRRDS WSEMDDERSN GTSFSTTQLS ISIPMPRCD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G020400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764040.0AK376404.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557172.10.0growth-regulating factor 5 isoform X1
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A0Q3JPZ70.0A0A0Q3JPZ7_BRADI; Uncharacterized protein
STRINGBRADI1G50597.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]