PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G035600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 365aa    MW: 39075.6 Da    PI: 4.9364
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G035600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ ++  e++  C  ++  lC+ C +e H        H++vpl
  Brast07G035600.1.p  4 QCNACGAAEARVLCCADEAALCAACDEEVHAAnrlagkHQRVPL 47
                        7******99*********************66789999999986 PP
2zf-B_box292.2e-095891235
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                        e++kC+ +++    +fC +++ llC+dC +++H 
  Brast07G035600.1.p 58 EPPKCDICQDASGYFFCLEDRALLCRDCDVAIHT 91
                        679*****************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
CDDcd000215.32E-9347No hitNo description
SMARTSM003364.1E-9447IPR000315B-box-type zinc finger
PfamPF006431.3E-5447IPR000315B-box-type zinc finger
SMARTSM003363.7E-1657104IPR000315B-box-type zinc finger
PROSITE profilePS501198.8357104IPR000315B-box-type zinc finger
PfamPF006432.4E-75891IPR000315B-box-type zinc finger
CDDcd000211.62E-861104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCAACDE EVHAANRLAG KHQRVPLLSD APTAAAAEPP  60
KCDICQDASG YFFCLEDRAL LCRDCDVAIH TVNSFVSVHQ RFLLTGVQVG LDPADPVPPI  120
ADKHVIASGG SVDSQMKHLP KQNPTVLFSG ESSVSIPSQN AISEDYSRQS PVSNIRTGMA  180
NWTMNNSAIR SAEPPPKYLS EGSPTLMLSS QTTTTFSNQM DKASDRAYNL PFSGGNGSDS  240
LPDWHVDEFF SNSEYGPNFG FAEHGSSKGD NAKLGSAGGS PQCRLAEGLF AEDLLGQVPG  300
FVAEDPWVVP EVPSPPTASG LYWQGNLRYP MYDHAMFVPE IPSLQSSQNH FTASDGSKRR  360
RRAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G035600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564326.10.0B-box zinc finger protein 22
TrEMBLI1H1100.0I1H110_BRADI; Uncharacterized protein
STRINGBRADI1G49260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-57light-regulated zinc finger protein 1