PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G041900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 358aa    MW: 37708.7 Da    PI: 6.8367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G041900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.9e-27125185259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ g++fpr+YYrCt++   gCp+ ++v+rs+ d  v+++tY+g H+++
  Brast07G041900.1.p 125 DDGFSWRKYGQKDILGAKFPRGYYRCTYRtaqGCPAIRQVQRSDADFAVLDVTYQGAHTCR 185
                         8**************************998899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-26118186IPR003657WRKY domain
SuperFamilySSF1182902.09E-23122186IPR003657WRKY domain
SMARTSM007741.4E-37124186IPR003657WRKY domain
PfamPF031064.5E-25125185IPR003657WRKY domain
PROSITE profilePS5081122.045125182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAGMQEGGEM QALLSILAEG EEQARRLLLQ DGDGRECCRA VAGQLGRTIG KAMAAAKAIQ  60
AARGAASASA GTDERSGSPR SADESSAAQP QVLQERQGVC KRRKGLPRWT EKFRIPDTNL  120
EYTPDDGFSW RKYGQKDILG AKFPRGYYRC TYRTAQGCPA IRQVQRSDAD FAVLDVTYQG  180
AHTCRQINHR HPVPVPQPPP SAPAHGGIHP DLQLLATFKD GLKVETTDHG PSPSASSFQI  240
HGLHHHGASF PYAAGAAGFP SSSPGFVVSP GPATAPAAAG GSGYFSSAAA GSELGEVVSA  300
ATSSAPANPA GFEHYPLFQY DYDPLQQDDL DPDLQFPAMF GHPSASSSSP GQHNRDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-191261921879Disease resistance protein RRS1
5w3x_D8e-191261921879Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G041900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757278.11e-151probable WRKY transcription factor 2
TrEMBLA0A2K2DQD71e-149A0A2K2DQD7_BRADI; Uncharacterized protein
STRINGBRADI1G48770.11e-147(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-36WRKY DNA-binding protein 30