PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G044200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26134.5 Da    PI: 7.8853
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G044200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  Brast07G044200.1.p  9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59
                        79***********************************************96 PP
2K-box93.43.9e-31831749100
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++ +++ s +qe+ kLk ++e Lq++qR+llGedL++Ls+keL+qLe+q+e slk+iRs+K++  l+q+ el++ke++lq+ nk+Lrkk++
  Brast07G044200.1.p  83 ATPETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLGPLSMKELEQLENQIEISLKHIRSTKSQQSLDQLFELKRKEQQLQDVNKDLRKKIQ 173
                         34444557889*******************************************************************************9 PP

               K-box 100 e 100
                         e
  Brast07G044200.1.p 174 E 174
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.039161IPR002100Transcription factor, MADS-box
CDDcd002652.31E-43277No hitNo description
SuperFamilySSF554552.35E-32283IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.27288178IPR002487Transcription factor, K-box
PfamPF014866.1E-2690173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS  60
SCMYKTLERY RNCNSNSNSE ATATPETELS NYQEYLKLKT RVEFLQTTQR NLLGEDLGPL  120
SMKELEQLEN QIEISLKHIR STKSQQSLDQ LFELKRKEQQ LQDVNKDLRK KIQETSAENV  180
LHMSCQDVGP SGSTGHTNQA NQQDFFSVCD PSLHIGYQAY MDHLNNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-248717216101Developmental protein SEPALLATA 3
4ox0_B3e-248717216101Developmental protein SEPALLATA 3
4ox0_C3e-248717216101Developmental protein SEPALLATA 3
4ox0_D3e-248717216101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G044200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693030.0KF469303.1 Brachypodium distachyon MADS-box transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288306.11e-161MADS-box transcription factor 5-like
SwissprotA2Y9P01e-137MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-137MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLI1H0S11e-159I1H0S1_BRADI; MADS-box transcription factor 7
STRINGBRADI1G48520.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.14e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]