PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G063900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 150aa    MW: 17070.1 Da    PI: 10.6193
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G063900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.3e-131152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        ien+++r  t+ kR  g+ KK  EL +LCd+ ++++++ ++ 
  Brast07G063900.1.p 11 IENNTKRRATLRKRIPGLVKKIGELAILCDIPACLVVYHPDE 52
                        9*************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.035148IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-20181IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-14160IPR002100Transcription factor, MADS-box
CDDcd002662.65E-20378No hitNo description
PRINTSPR004042.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPRMRVKIQW IENNTKRRAT LRKRIPGLVK KIGELAILCD IPACLVVYHP DEEQPVVWPS  60
TGEAANVVQN YLDLPESKKL KTRLGTKGFH QQQVIKEKAK LSKPSQFFTH RRHSFEDLAI  120
EVLIGLKLKV KERLTAVNTL LQDIHLGST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G063900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312442.17e-69agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3K3Y72e-67A0A0Q3K3Y7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-22M-type_MADS family protein