PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G064000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18828.9 Da    PI: 10.0506
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G064000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.8e-121152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i n+++r  t  kR+  + KK +EL +LCd+ ++++++ ++ 
  Brast07G064000.1.p 11 IVNNTKRRATMKKRLPSLVKKISELAILCDIPACLVVYRPDE 52
                        7799*********************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-11160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.082148IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-20393IPR002100Transcription factor, MADS-box
CDDcd002667.74E-20385No hitNo description
PRINTSPR004044.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-121152IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MPRGKVKIQW IVNNTKRRAT MKKRLPSLVK KISELAILCD IPACLVVYRP DEEQPVVWPS  60
TGEVTSVVQN YYDLPKSKKL EKRLDAKSFH QQQVDKEKAE LFNAHRDNYD REINLIVKQF  120
FAHCRYSFED LGTEVLIHLK LKVKEHLQAI DTRLQIRVGS T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G064000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693513e-57KF469351.1 Brachypodium distachyon MADS-box transcription factor 57 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312442.19e-91agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3K3Y72e-89A0A0Q3K3Y7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.14e-22AGAMOUS-like 96