PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G067500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 300aa    MW: 32611.4 Da    PI: 9.1695
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G067500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.2e-2492136145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCsr++ + +k+C+rH+hrg++rsrk++e+
  Brast07G067500.1.p  92 DPEPGRCRRTDGKKWRCSREAFGESKYCDRHMHRGKNRSRKPVEP 136
                         79****************************************996 PP
2QLQ53.85.8e-191549236
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         FTa+Q+ +L++Q+l+yKy+aa+ +vP+eLl++ +
  Brast07G067500.1.p 15 LFTASQWRELEQQALIYKYMAAGSQVPHELLLPFR 49
                        5******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-81450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.7361550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.9E-131647IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.25192136IPR014977WRC domain
PfamPF088791.1E-1993135IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMLRGGQGGG GGRCLFTASQ WRELEQQALI YKYMAAGSQV PHELLLPFRH AAAAVDTAPS  60
LACFPPPPSH HPSLGWGCYG PAAMQYGRRA EDPEPGRCRR TDGKKWRCSR EAFGESKYCD  120
RHMHRGKNRS RKPVEPPTPP SSSSSYRPSA LSISPPTPNN GSYGHQFLRH GPSSVNPLQL  180
HLDAPSPPPS YHRYAPQYSS TSSFFPQAGH GYGCEFRPGA MPEHEEALLA RRRLGADLSL  240
DKPDAAPTEG EKTKPLRRFL DEWPRGDGGG GDGTQLSMSI PAASPPAAAS RYHHHNGNE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312RGGQGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G067500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560956.11e-161growth-regulating factor 2
SwissprotQ6AWY77e-95GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLI1H0031e-160I1H003_BRADI; Uncharacterized protein
STRINGBRADI1G46427.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-36growth-regulating factor 5