PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G069700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 703aa    MW: 76491 Da    PI: 5.6196
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G069700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-212378156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        r++ +++t+ q+++Le++F+++++p++++r++L+++lgL+ rq+k+WFqNrR+++k
  Brast07G069700.1.p 23 RKRYHRHTPRQIQTLEAMFKECPHPDENQRAQLSRELGLEARQIKFWFQNRRTQMK 78
                        789999***********************************************998 PP
2START135.27.2e-432294542205
                         HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
               START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla 77 
                         +a +a++e++++a+a++ +W k++     e +n d++ + f +              ++e  r s++v+m +a lve ++d++ +W e ++
  Brast07G069700.1.p 229 IAARAMDEVIRLAQAGDHVWIKVPggdgcEALNVDTYDSLFGK--PgssssfragdIRVEGTRHSALVFMSAAPLVEVFMDSN-KWMEFFP 316
                         6789*************************66666666666633..233566999999**************************.******* PP

                         ....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
               START  78 ....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                              a t++ + +g     + l lm+ el +l+plv  R+f f+Ry+rq  +g w+i+dvSvd e++++      R+++lpSg+li +++
  Brast07G069700.1.p 317 sivaNARTVDNLVNGldgrsESLILMYEELHMLTPLVQsREFSFLRYCRQIDQGLWAIADVSVDTERDVQ-FGVPSRSRRLPSGCLIADMA 406
                         9999*****************************************************************9.45557999************ PP

                         TCEEEEEEEE-EE--SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 159 nghskvtwvehvdlkgr.lphwllrslvksglaegaktwvatlqrqce 205
                         ng+skvtwveh++ +++ l+  l+r +v sg+a+ga++w+ +l + c 
  Brast07G069700.1.p 407 NGYSKVTWVEHMEIEDKaLIGVLYRDMVTSGAAFGAQRWLGALSNACH 454
                         **************876266***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-22974IPR009057Homeodomain-like
SuperFamilySSF466894.6E-201180IPR009057Homeodomain-like
PROSITE profilePS5007117.9122080IPR001356Homeobox domain
SMARTSM003891.3E-192184IPR001356Homeobox domain
CDDcd000863.30E-192281No hitNo description
PfamPF000461.3E-182378IPR001356Homeobox domain
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PROSITE profilePS5084841.682219458IPR002913START domain
SuperFamilySSF559613.98E-29220457No hitNo description
CDDcd088752.88E-92223453No hitNo description
SMARTSM002345.1E-23228455IPR002913START domain
PfamPF018523.1E-35229454IPR002913START domain
Gene3DG3DSA:3.30.530.207.0E-5289421IPR023393START-like domain
SuperFamilySSF559611.28E-18478693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MDFGDDFPEG SDSHGQQQQN NRRKRYHRHT PRQIQTLEAM FKECPHPDEN QRAQLSRELG  60
LEARQIKFWF QNRRTQMKAQ HERADNCFLR AENDKIRCEN IAMSEALKNV ICPTCGGPPV  120
GEDFFDEQKL RMENARLKEE LDRVSTVASK FMGRPYTQMP HGTPPLSVNS LDLSMGGLGM  180
GGQQLGVGGL VGGPAPQDFE LLAGGSSEIP QFHMPAPVTE MERPVMAGIA ARAMDEVIRL  240
AQAGDHVWIK VPGGDGCEAL NVDTYDSLFG KPGSSSSFRA GDIRVEGTRH SALVFMSAAP  300
LVEVFMDSNK WMEFFPSIVA NARTVDNLVN GLDGRSESLI LMYEELHMLT PLVQSREFSF  360
LRYCRQIDQG LWAIADVSVD TERDVQFGVP SRSRRLPSGC LIADMANGYS KVTWVEHMEI  420
EDKALIGVLY RDMVTSGAAF GAQRWLGALS NACHRYAALA ALGVMNPADL GGGVTADGRR  480
SMMKLSQRMV ASFCGALTSN QLIVWTTISG GANEMNVRVS LHRVDEPGVP NGVVLSAASS  540
IWLPVPGDHV LAFLRDVNTR NQWDVLTHGN TVQEVCRIHN GSEPGNCVTL LRGVNASQDS  600
MLVLQESCAD PSGSMVVYSP IDMPAVNLVT SGEDPATIPL LPSGFIILPD GRNSVSGCVV  660
TVAFQILISS LPNSKVNSES IVTVNGLINT TVANLKTALN CG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G069700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016511e-143AB101651.1 Oryza sativa Japonica Group Roc8 mRNA for GL2-type homeodomain protein, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564122.20.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A0Q3JMV00.0A0A0Q3JMV0_BRADI; Uncharacterized protein
STRINGBRADI1G46247.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11