PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G071200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 228aa    MW: 23378.9 Da    PI: 4.4481
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G071200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-162876355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ykGVr ++ +g Wv+eIr p   g+++r++lg++ tae Aa+a++aa ++l+g
  Brast07G071200.1.p 28 YKGVRMRS-WGAWVSEIRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 76
                        9****998.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-312790IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-182786IPR016177DNA-binding domain
PROSITE profilePS5103220.6392784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-282784IPR001471AP2/ERF domain
PfamPF008477.8E-102876IPR001471AP2/ERF domain
PRINTSPR003673.9E-82839IPR001471AP2/ERF domain
CDDcd000184.73E-162885No hitNo description
PRINTSPR003673.9E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAKTAARSNG ASSAAKQQQQ LGGKMRTYKG VRMRSWGAWV SEIRAPGQKT RIWLGSHSTA  60
EAAARAYDAA LLCLKGSAAD LNFPVRFPFE LPAAAMSPKS IQRVAAAAAA AASAGAGFAI  120
DAEDSSSGSG SGSDGMVTPA CSSSSSNGAS AVSSPETASS DDAGAHEPDY YGALADIEAF  180
FQSPKCMEYA MMDPCSAFFA PAPMAMEDGW GEEEEGDIAL WSFSSLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-142486265ATERF1
3gcc_A9e-142486265ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G071200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708701e-112AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17.
GenBankAK3761001e-112AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560937.11e-112ethylene-responsive transcription factor ERF014
TrEMBLI1GZW11e-111I1GZW1_BRADI; Uncharacterized protein
STRINGBRADI1G46120.11e-112(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.14e-27ERF family protein