PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G078300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 231aa MW: 26700.3 Da PI: 9.7308

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G078300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.9	2.4e-15	132	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +t+s+v+ +l lp +f +++ +k ++ ++l de+ + e + k++ l++GW++F+ +++L +gD +vF+l++r++f Brast07G078300.1.p 132 FVKPMTQSHVTGGFWLGLPTQFSRKYL-PK-RDERIILVDEEDDESETLYLALKRG----LSAGWRGFAIDHKLVDGDCLVFQLIERTKF- 215 89**********************4.32.4457999998888888888555555....9**********************98888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v ++r+ Brast07G078300.1.p 216 -KVYIIRE 222 .8988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-23	126	223	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-19	127	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.03E-25	130	221	No hit	No description
PROSITE profile	PS50863	11.787	132	223	IPR003340	B3 DNA binding domain
SMART	SM01019	7.8E-19	132	223	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-13	132	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAGAIPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPAKSLKRK SRVQGEAGQD 60 VPLRRSGRVA SLPEQPKYRY EDSLVFEKKP RRTYSTRKDL TNRVYATDEA RDYTITKAEE 120 LQDKLGSGYP IFVKPMTQSH VTGGFWLGLP TQFSRKYLPK RDERIILVDE EDDESETLYL 180 ALKRGLSAGW RGFAIDHKLV DGDCLVFQLI ERTKFKVYII RESSYYENDN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G078300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374346	5e-44	AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227844.1	1e-163	B3 domain-containing protein Os06g0194400
Refseq	XP_010227845.1	1e-163	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-122	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	I1GZP0	1e-162	I1GZP0_BRADI; Uncharacterized protein
STRING	BRADI1G45517.1	1e-163	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-56	B3 family protein

Link Out ? help Back to Top
Phytozome	Brast07G078300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]