PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G091600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 245aa    MW: 28359.9 Da    PI: 7.3459
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G091600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.7e-11153199147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+ WT +E+ l++++   +G g Wk I++ + + Rt+ q+ s+ qky
  Brast07G091600.1.p 153 RNFWTIDEHRLFLRGLSVYGRGKWKEISKNFVTSRTPLQISSHAQKY 199
                         678*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.645148204IPR017930Myb domain
SuperFamilySSF466892.9E-15150205IPR009057Homeodomain-like
SMARTSM007178.1E-9152202IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.3E-13153202IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-10153201IPR009057Homeodomain-like
CDDcd001671.94E-7156200No hitNo description
PfamPF002492.7E-8156199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNTRANQKWT SSEVEEARSV IASLNSKYRD YDGEYHDNII GELQAKFPSK TMHQVRDLYV  60
DLVVEMDMMQ CEEKEYGGAN GVIHNIDGHV NNYGVPEERE VSMDGKDILH GFPLKHVGIV  120
ETMKKVPVVK DNNVEVLENK MPVHQPVVER SSRNFWTIDE HRLFLRGLSV YGRGKWKEIS  180
KNFVTSRTPL QISSHAQKYF KRLQKGSERQ RYSINDVELE NNDRMNLENN ARPSQNIGQF  240
KFPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G091600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229882.27e-76transcription factor DIVARICATA
TrEMBLA0A0Q3H7V17e-99A0A0Q3H7V1_BRADI; Uncharacterized protein
STRINGMLOC_16598.15e-78(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-21Homeodomain-like transcriptional regulator