PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G097600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 437aa    MW: 47685.1 Da    PI: 8.87
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G097600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10148190446
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                          k err+++NReAAr+sR RKka++++Le    +L++  ++L+
  Brast07G097600.1.p 148 QKIERRLAQNREAARKSRIRKKAYVQQLESSRSKLTQLEQELQ 190
                         588**************************99999998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-7142192No hitNo description
SMARTSM003383.7E-8145241IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.576147191IPR004827Basic-leucine zipper domain
PfamPF077162.9E-7147191IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.45E-7149192No hitNo description
CDDcd147087.48E-23149201No hitNo description
PROSITE patternPS000360152167IPR004827Basic-leucine zipper domain
PfamPF141441.3E-29231307IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MHQPRPFHVF RAGRGGTTAG YHIGDGAALP PPELYPRTTG PNPSSKSSSN LTVATFPPLA  60
NADGVVASLG MAAPGALREV DRFCLPRASA QFENWGDSGI VVTSPLTETS TDLDESADKR  120
LVSMGGGGGG AQRRVGGCVD TSERKGDQKI ERRLAQNREA ARKSRIRKKA YVQQLESSRS  180
KLTQLEQELQ RARQQGIFVG SGGSSDHGCS TGGALAFDLQ YARWLDEYQH HVNDLRVAVN  240
ANISDEELRI VVEAVMLHYD HLFRLKSIAT KSDVFHVLSG MWMSPAERFF MWLGGFRSSE  300
LLKVLASHLE PLTDQQLMGI CNLQQSSLQA EDALSQGMEA LQQALAETLA FAAAVVPSAG  360
SGDNMTNYMS QMAIAMAKLS TLENFLRQGD LLRQQTLQQM HRILTTRQAA RALLVISDYF  420
SRLRALSSLW LARPRA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G097600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229877.20.0transcription factor TGAL3
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0Q3L6230.0A0A0Q3L623_BRADI; Uncharacterized protein
STRINGBRADI1G43900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-109bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]