PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G097600.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 436aa    MW: 47614 Da    PI: 8.87
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G097600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10147189446
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                          k err+++NReAAr+sR RKka++++Le    +L++  ++L+
  Brast07G097600.2.p 147 QKIERRLAQNREAARKSRIRKKAYVQQLESSRSKLTQLEQELQ 189
                         588**************************99999998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-7141191No hitNo description
SMARTSM003383.7E-8144240IPR004827Basic-leucine zipper domain
PfamPF077162.9E-7146190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.576146190IPR004827Basic-leucine zipper domain
CDDcd147081.41E-22148200No hitNo description
SuperFamilySSF579593.45E-7148191No hitNo description
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
PfamPF141441.3E-29230306IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MHQPRPFHVF RAGRGGTTAG YHIGDGAALP PPELYPRTSP NPSSKSSSNL TVATFPPLAN  60
ADGVVASLGM AAPGALREVD RFCLPRASAQ FENWGDSGIV VTSPLTETST DLDESADKRL  120
VSMGGGGGGA QRRVGGCVDT SERKGDQKIE RRLAQNREAA RKSRIRKKAY VQQLESSRSK  180
LTQLEQELQR ARQQGIFVGS GGSSDHGCST GGALAFDLQY ARWLDEYQHH VNDLRVAVNA  240
NISDEELRIV VEAVMLHYDH LFRLKSIATK SDVFHVLSGM WMSPAERFFM WLGGFRSSEL  300
LKVLASHLEP LTDQQLMGIC NLQQSSLQAE DALSQGMEAL QQALAETLAF AAAVVPSAGS  360
GDNMTNYMSQ MAIAMAKLST LENFLRQGDL LRQQTLQQMH RILTTRQAAR ALLVISDYFS  420
RLRALSSLWL ARPRA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G097600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229877.20.0transcription factor TGAL3
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0Q3L6230.0A0A0Q3L623_BRADI; Uncharacterized protein
STRINGBRADI1G43900.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-109bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]