PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G100900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 165aa MW: 18126.5 Da PI: 6.0777

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G100900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	50	73	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +Cg +F + ++H+ + H Brast07G100900.1.p 50 FECDICGFTFCTVKAIRKHMLSsH 73 89******************9988 PP
2	zf-C2H2	12.2	0.00057	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cgk+F + L H +H Brast07G100900.1.p 87 YMCEHCGKRFMSGRALGGHRASH 109 89********8888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.45	50	78	IPR007087	Zinc finger, C2H2
Pfam	PF13894	3.6E-4	50	73	No hit	No description
SMART	SM00355	4.0E-4	50	73	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	7.04E-8	50	109	No hit	No description
PROSITE pattern	PS00028	0	52	73	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.8E-5	85	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.217	87	114	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.8E-9	87	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MAASPNFPRL TLSLSSAGGG DEEPLRYYPW RVKSAHELDD GFIDPLHTSF ECDICGFTFC 60 TVKAIRKHML SSHPDADPVE TPSIRRYMCE HCGKRFMSGR ALGGHRASHR GKKGCLMLSK 120 QEHVEDFPSM AAAAAIGAPP AMVRDFDLNE PAPEEEQEEK DPPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G100900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0Q3KQH7	1e-62	A0A0Q3KQH7_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37257	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	4e-09	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Brast07G100900.1.p