PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G114700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 245aa MW: 26207.2 Da PI: 5.2897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G114700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.2e-07	155	198	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ + RR+ri +++ L+el+P+ K++ +++L kA+ Y+k +q Brast07G114700.1.p 155 QAAKSRRERIGERLRALQELVPNG-----SKVDMVTMLDKAITYVKFMQ 198 66799****************5.....5**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-13	146	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-12	147	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.869	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.08E-11	149	201	No hit	No description
SMART	SM00353	3.0E-9	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-5	155	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MALVGQPTTL CYDGFAGDGV PPFMDACCLA FDHGNDYNNP HAWEFSTGNS SAFDVAWTGV 60 SSTSPALTFD AAEYCAQQAA WMDATATDQL SSYSPSTATV PASYKRPRAH VQPQQEAEQE 120 SIAPNPKKQC GDGKASIKSS AAGTGTSPRK EPQSQAAKSR RERIGERLRA LQELVPNGSK 180 VDMVTMLDKA ITYVKFMQLQ LTVLETDAFW PAQGGAAPEI SQVKAALDAI ILSSSRSQQP 240 HQWS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G114700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229851.1	1e-147	transcription factor bHLH83
Swissprot	Q9C707	7e-40	BH083_ARATH; Transcription factor bHLH83
TrEMBL	I1GYN5	1e-145	I1GYN5_BRADI; Uncharacterized protein
STRING	BRADI1G42440.1	1e-146	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	3e-42	ROOT HAIR DEFECTIVE6

Link Out ? help Back to Top
Phytozome	Brast07G114700.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Lin CY, et al. Pathways involved in vanadate-induced root hair formation in Arabidopsis. Physiol Plant, 2015. 153(1): p. 137-48 [PMID:24833217] Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J Root hairs. Arabidopsis Book, 2014. 12: p. e0172 [PMID:24982600] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Moro CF, et al. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. New Phytol., 2017. 213(4): p. 1771-1786 [PMID:27880005] Bahmani R,Kim DG,Kim JA,Hwang S The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis. Front Plant Sci, 2016. 7: p. 1763 [PMID:27933081] Liao X,Lovett B,Fang W,St Leger RJ Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects. Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991 [PMID:28708056] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]