PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G118300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 93aa    MW: 10360.3 Da    PI: 5.7254
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G118300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08650344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT+e+ + + +a + +  g   +W  +ar +g gR++++ + ++
  Brast07G118300.1.p  6 DWTEELNQVFEQALATYEEGtpdRWQNVARAVGGGRSAEDMIRHY 50
                        6**************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0027356IPR001005SANT/Myb domain
SuperFamilySSF466893.33E-10561IPR009057Homeodomain-like
PfamPF002493.3E-6650IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MMRPSDWTEE LNQVFEQALA TYEEGTPDRW QNVARAVGGG RSAEDMIRHY EFLQRDVHRI  60
ETSPQPGESS SSNSKASGSG SSSKDKRYPK PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-157881187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G118300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563864.11e-43protein RADIALIS-like 4
SwissprotQ6NNN02e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0Q3H7272e-42A0A0Q3H727_BRADI; Uncharacterized protein
STRINGSi008591m2e-23(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-19RAD-like 1