PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G122000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20225.2 Da    PI: 9.6751
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G122000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF602.8e-192269249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        rienk  r vtfskR+ g+ KK +E+ vLC a++a++ fs+ gk++ +
  Brast07G122000.1.p 22 RIENKESRLVTFSKRKSGLWKKGSEIAVLCHARIALLAFSEAGKVFAF 69
                        9********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.9411373IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-221372IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-221478IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-181535IPR002100Transcription factor, MADS-box
PfamPF003191.2E-192269IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-183550IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-185071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVQPRALGEK KTAGKRSIRI QRIENKESRL VTFSKRKSGL WKKGSEIAVL CHARIALLAF  60
SEAGKVFAFG SPSVDAVLGD GAVVAPADDG AEWEAVEALY RETEGRVKEV AAESARMDAI  120
AEKVRQAQAL AGKRFWFEVD VEALGAEELP VFAMALQRLR DNVGHRIESC LNSAAAKVGQ  180
NRSPFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G122000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693400.0KF469340.1 Brachypodium distachyon MADS-box transcription factor 46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288320.11e-119agamous-like MADS-box protein AGL62-like
RefseqXP_010233935.11e-119agamous-like MADS-box protein AGL62-like isoform X1
TrEMBLI1GYD61e-118I1GYD6_BRADI; MADS-box transcription factor 46
STRINGBRADI1G39927.11e-119(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-19AGAMOUS-like 64