PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G140100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 702aa    MW: 81261.9 Da    PI: 7.7652
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G140100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.3e-2070162290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                          Y++YA+  GF +r+++++   ++ge+ +++fvC+kegk+++ k++       + +r++++++rt C+a++k+k++  +++ v+++++eHn
  Brast07G140100.1.p  70 HYENYARWNGFWTRMDYQRPI-KSGETSRAQFVCYKEGKNKKAKEDnqrpesVVPKRKRSTTERTVCHARMKIKLD-GATYIVEQFDEEHN 158
                         6***************99887.7888****************999999999888999999****************.9************* PP

                FAR1  87 Hela 90 
                         H+++
  Brast07G140100.1.p 159 HPVN 162
                         *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-1770162IPR004330FAR1 DNA binding domain
PfamPF105514.0E-16284338IPR018289MULE transposase domain
PROSITE profilePS509668.778529565IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MYGGANTMDG LARAVDVGPS TLAPAAMLHR ASDERADDGG DNGEDDDGIS GPKKPEVNTR  60
FESIRAAQEH YENYARWNGF WTRMDYQRPI KSGETSRAQF VCYKEGKNKK AKEDNQRPES  120
VVPKRKRSTT ERTVCHARMK IKLDGATYIV EQFDEEHNHP VNKKFNLTKY LRSHRHMPRD  180
EWQFVKLLHE CNFHTSQMMQ LLSHLHGTLS DLTYTRMDMA NFRAALRREH CVMDMQHTLR  240
YFEQLKMEDN DFFYSFELDD EDRVINLYWV DGEARRSYKY YNDCISFDTT YLTNKYNMPC  300
APFIGINNHG QSVQFGSGFM TNEDTLSFVW LFKTFLEAWM ALLRNCRWHI MKEVQEKLGG  360
FMGRNLELHA DFEDCINNGL TPEEFEWKRN TMIEKYQVHD NQDLEALWEN RTSWVPAYFM  420
MNFYPFLPST QCSEGFNAVL KRYVSPSNSI FDFARQYTVL QQKILGAERQ AEVETALTVP  480
KKWGFSTIEE QVKLIYTRRM FNRFQEELQL TSSYHCLRTG ATMYETIAYR LAADITTGMY  540
SCECCKFDRD DIVCCHILRV MQHEGVRVLP QHYLLKRWTW NADAALGPHG SQQLNPTHDI  600
AKDACYGQDA TKIVERHMKA MRSELAALKK REEKDARSKE AIGMSRGHGP PSVRSASGAA  660
PQGPASAAAH TKKQGRCKIC RSGEHDARTC QQKMANRTTC T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G140100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314049.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_024314050.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_024314051.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A0Q3K7S70.0A0A0Q3K7S7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-81FAR1-related sequence 5