PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G142100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 248aa    MW: 26272.5 Da    PI: 9.5067
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G142100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1002.2e-3115103299
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +++++
  Brast07G142100.2.p  15 FVWKTYRMVEDPGTDGVIGWGAASNSFVVADPFVFSQTLLPTHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHGSFLRSQTH 96 
                         9****************************************************************999.........************** PP

                         XXXXXXX CS
        HSF_DNA-bind  93 llekikr 99 
                         ll++i r
  Brast07G142100.2.p  97 LLRNIVR 103
                         *****88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.2E-4711104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3212103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-3612103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-2815103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAAASVGGGA TAAPFVWKTY RMVEDPGTDG VIGWGAASNS FVVADPFVFS QTLLPTHFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFAHGSF LRSQTHLLRN IVRGGGGKRK DAAAAEATDQ  120
DMTMVATEVV RLKKEQRTID DRVAAMWRRV QETERRPKQM LAFLLTVVGD RDTLLRLVSG  180
GDEPVEGGEK RARLRLDGGG ASKLGPDAAD FAGFANQLAV DVAAGAGSSV GGGGAGSSFG  240
FGADGGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-24610311119Heat shock factor protein 1
5d5u_B1e-23810322128Heat shock factor protein 1
5d5v_B1e-23810322128Heat shock factor protein 1
5d5v_D1e-23810322128Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G142100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2346531e-158KF234653.1 Triticum aestivum heat shock factor C2a (HsfC2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563770.11e-133heat stress transcription factor C-2b isoform X2
SwissprotQ0DBL61e-108HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLI1GY321e-132I1GY32_BRADI; Uncharacterized protein
STRINGBRADI1G38140.11e-132(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-58heat shock transcription factor C1