PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G148600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 990aa MW: 111203 Da PI: 7.9506

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G148600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.6e-20	160	278	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............................tekerrtraetrtg 61 Yn+YA+ GFs++ ++s++s ++ k++fvC+k k+++ +++ +k+rr+++ ++t+ Brast07G148600.1.p 160 HYNAYARXKGFSIKSNTSRRSAYTNLXEKQQFVCNKFRKPKNVDDAggqsskvxrkesssdedpidatnedssaikkVVKRRRRESIKQTE 250 6**************************************999999************************99899999999* PP FAR1 62 CkaklkvkkekdgkwevtkleleHnHela 90 Ckak++ k++ dg+w+v+ ++ eHnHel Brast07G148600.1.p 251 CKAKMTXKLM-DGRWQVIFFVAEHNHELI 278 ******.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-18	160	278	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-32	401	495	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.025	683	719	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MFFFSKRKHI VCLLPSITNQ VTMLDLNEIP LDQGLEAPLD SGHGGDAEPA YCTXVTLVDV 60 REGVGESPAT IXIADNEPLR EDTYVVAPVA GRTIVVAEHS GGVAQDTXGV AEXAXGVTPN 120 TXGVACEAPA NIEQELEYSS QPQEPYLGMR FDTLXGAKEH YNAYARXKGF SIKSNTSRRS 180 AYTNLXEKQQ FVCNKFRKPK NVDDAGGQSS KVXRKESSSD EDPIDATNED SSAIKKVVKR 240 RRRESIKQTE CKAKMTXKLM DGRWQVIFFV AEHNHELITR PSLTKYLLSH KNISPEEEEF 300 IRLLDDCNLQ TGQMMTLLSR FYANGLIVPY TTKTISNFRS KIRSERKGDD MAEIVSYFMA 360 KQKEDPTFYF NVKMDEDERV ELLFWVDGLA RKAYTESYHD CISFDTTYLT NQYNMPFAPF 420 IGINRHGQSF MLGCGFMRDE TASSFDWLLE KYLDAMDGRA PLNIITBQDY AMRASIAXXF 480 PNTVHXNCRW HIMKKAQEKL GSFLGRRPGL SQDFNECIDM SMTPPEFEQN WAALVANHRL 540 EEHADFAHLY SIRKTWVPCY FRQCFFPFLQ STQHSEGFNA VLKRYVNPHN SILNFVKQYE 600 KIQVKILVKE GGNDYRIDHL TQCTWSAYPI EKQAFAVYTR DIYVKFRDEF MLXGRYNVRP 660 QPNGLYQXVP NMTYCQFYGA RSYLVLARVQ EEEYICECGK MNRDGLLCCH ILKVFTHLGI 720 DEIPERFIMR RWTQNTIPGE PARRDEAEPD ALPPESLKQM RMANLSVKYG DLAKIGCCXD 780 AANAIAEKYI HLTRTEINHL NLTRRKDARR RRDAAARSAN EASASAAPAT APRHSATSAR 840 TSATAPHRSA TSAPTSVAPP RRSAAASCDP APAAASGAIA PHPSATTLVN PATAYETSGP 900 HPSGAANLDT TIAAASEASA SHPLAIAAAT ASASIDPSRV RNRDRCPTKG RPHKRRLENA 960 LELHPKKRNR CILCNSDEHN AARCPLKIS*

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MFFFSKRKHI VCLLPSITNQ VTMLDLNEIP LDQGLEAPLD SGHGGDAEPA YCTXVTLVDV  60
REGVGESPAT IXIADNEPLR EDTYVVAPVA GRTIVVAEHS GGVAQDTXGV AEXAXGVTPN  120
TXGVACEAPA NIEQELEYSS QPQEPYLGMR FDTLXGAKEH YNAYARXKGF SIKSNTSRRS  180
AYTNLXEKQQ FVCNKFRKPK NVDDAGGQSS KVXRKESSSD EDPIDATNED SSAIKKVVKR  240
RRRESIKQTE CKAKMTXKLM DGRWQVIFFV AEHNHELITR PSLTKYLLSH KNISPEEEEF  300
IRLLDDCNLQ TGQMMTLLSR FYANGLIVPY TTKTISNFRS KIRSERKGDD MAEIVSYFMA  360
KQKEDPTFYF NVKMDEDERV ELLFWVDGLA RKAYTESYHD CISFDTTYLT NQYNMPFAPF  420
IGINRHGQSF MLGCGFMRDE TASSFDWLLE KYLDAMDGRA PLNIITBQDY AMRASIAXXF  480
PNTVHXNCRW HIMKKAQEKL GSFLGRRPGL SQDFNECIDM SMTPPEFEQN WAALVANHRL  540
EEHADFAHLY SIRKTWVPCY FRQCFFPFLQ STQHSEGFNA VLKRYVNPHN SILNFVKQYE  600
KIQVKILVKE GGNDYRIDHL TQCTWSAYPI EKQAFAVYTR DIYVKFRDEF MLXGRYNVRP  660
QPNGLYQXVP NMTYCQFYGA RSYLVLARVQ EEEYICECGK MNRDGLLCCH ILKVFTHLGI  720
DEIPERFIMR RWTQNTIPGE PARRDEAEPD ALPPESLKQM RMANLSVKYG DLAKIGCCXD  780
AANAIAEKYI HLTRTEINHL NLTRRKDARR RRDAAARSAN EASASAAPAT APRHSATSAR  840
TSATAPHRSA TSAPTSVAPP RRSAAASCDP APAAASGAIA PHPSATTLVN PATAYETSGP  900
HPSGAANLDT TIAAASEASA SHPLAIAAAT ASASIDPSRV RNRDRCPTKG RPHKRRLENA  960
LELHPKKRNR CILCNSDEHN AARCPLKIS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G148600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233530.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3GTY5	0.0	A0A0Q3GTY5_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-95	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast07G148600.1.p