PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G166900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 494aa    MW: 52030.9 Da    PI: 6.7436
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G166900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2891.3e-881104922373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 
                         +el+l+cA  ++ gd ++a+++   l   +sp+gd+  Rla +f++ALa r       ++  +pp + +++  s      + +f+++ P+l
  Brast07G166900.1.p 110 RELVLACAGLLQRGDPAAARRAADILLSASSPRGDAADRLAYHFARALALRADA----MSGRVPPFAFPSSGsSGGGPGPYLAFNQIAPFL 196
                         6899***********************************************999....6667777777655524445566777******** PP

                GRAS  92 kfshltaNqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                         +f+hltaNqaIl+ v +g++rvHi+D+d+ +GlQWp+LlqaLa+R+      gpp++RiTg g+    ++++l +t+ rL+ fA+++++pf
  Brast07G166900.1.p 197 RFAHLTANQAILDGVpAGARRVHILDLDAAHGLQWPPLLQALADRAdpalgLGPPEVRITGAGP----DRDALLRTAARLRAFARSIRLPF 283
                         *************984577***************************5555445***********....9********************** PP

                GRAS 177 efnvl.......vakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF...... 253
                         +f++l         ++ ++ + ++L +++p+E+laVn+vl lh+l   + +l+    ++Lk v+ +sP vv+v+e+e++  ++sF      
  Brast07G166900.1.p 284 HFSPLllsssssQGSEGSSQQQQQLvELRPEETLAVNCVLFLHKLGGGQEELA----AFLKWVRAMSPAVVTVAERESSSAASSFdpaaaa 370
                         *****7665443222333335555549999***************95555555....5**********************99988444333 PP

                GRAS 254 ..lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                            + +  a+++y+a+f++lea++p+ s+er  vE+ +lgrei+ +v       + r    e+W ++ ++aGF + pls +a++qa+lllr
  Brast07G166900.1.p 371 mgTATIDAAMDHYAAVFEALEATVPPGSRERLAVEQDVLGREIEAAVLSGAGP-TWRGGGIERWAAAARAAGFAARPLSPFAVSQARLLLR 460
                         334567789************************************99877666.89*********************************** PP

                GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                          ++ s+gy v+e +g+ +lgW++rpL+svS+W
  Brast07G166900.1.p 461 LHYpSEGYLVQEARGACFLGWQTRPLLSVSSW 492
                         ******************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.07483472IPR005202Transcription factor GRAS
PfamPF035144.5E-86110492IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MHMTLLEGND EVQVDAMMGF LIWGLRHSIQ SWAINEDPTK GQNMRWLETW ACPLASGERR  60
SIDMLSSLRS SSSSSDTDNN NNSGGGGGVE AAAVQGGGIG RAPPPPPSAR ELVLACAGLL  120
QRGDPAAARR AADILLSASS PRGDAADRLA YHFARALALR ADAMSGRVPP FAFPSSGSSG  180
GGPGPYLAFN QIAPFLRFAH LTANQAILDG VPAGARRVHI LDLDAAHGLQ WPPLLQALAD  240
RADPALGLGP PEVRITGAGP DRDALLRTAA RLRAFARSIR LPFHFSPLLL SSSSSQGSEG  300
SSQQQQQLVE LRPEETLAVN CVLFLHKLGG GQEELAAFLK WVRAMSPAVV TVAERESSSA  360
ASSFDPAAAA MGTATIDAAM DHYAAVFEAL EATVPPGSRE RLAVEQDVLG REIEAAVLSG  420
AGPTWRGGGI ERWAAAARAA GFAARPLSPF AVSQARLLLR LHYPSEGYLV QEARGACFLG  480
WQTRPLLSVS SWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4513749331375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G166900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560591.20.0protein MONOCULM 1
SwissprotQ84MM91e-149MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0Q3H5H10.0A0A0Q3H5H1_BRADI; Uncharacterized protein
STRINGBRADI1G36180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.16e-56GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]