PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G170000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 300aa    MW: 31184.6 Da    PI: 10.2168
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G170000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06102127227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C+ f     Ck G++C+FaHg+
  Brast07G170000.1.p 102 KTRMCNKFNTAEGCKWGNKCHFAHGE 127
                         89**********************96 PP
2zf-CCCH38.22.4e-12265290127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC++f++ G+C +GdrC+FaHg+
  Brast07G170000.1.p 265 FKTKLCDNFSK-GFCTFGDRCHFAHGE 290
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4933462IPR000571Zinc finger, CCCH-type
SMARTSM003561.93461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-63562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-73660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-1498132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-8100131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389100128IPR000571Zinc finger, CCCH-type
SMARTSM003561.9100127IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-9170240IPR004087K Homology domain
PROSITE profilePS5008414.403171235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.1E-14171239IPR004088K Homology domain, type 1
PfamPF000131.9E-10173236IPR004088K Homology domain, type 1
CDDcd001057.87E-13173235No hitNo description
SuperFamilySSF547914.43E-14173266IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.4E-16263295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9264294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317264291IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-8264290IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9265290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDAGRKRAVP DGTNGGGAAK RARAESESFQ MGVGSKSKPC TKFFSTAGCP FGSGCHFLHN  60
FPGGHQAVSK MTNLGGPAVA TPPGRMPMGP GVPDGPPTPG VKTRMCNKFN TAEGCKWGNK  120
CHFAHGEREL GKPMLLNNSM VPPMGPRPNG HFVPPPMPAP DMVPPSTFGA SATAKISVDA  180
SLAGAIIGKG GVNTKHISRM TGAKLAIRDN EADPNFKNIE LEGTFDQIKY ASSMVTDLIV  240
RIGGNAPPAK NPTRGPHVGG GGNNFKTKLC DNFSKGFCTF GDRCHFAHGE SELRKSAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G170000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227497.10.0zinc finger CCCH domain-containing protein 44 isoform X1
SwissprotQ69XQ31e-169C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLI1GXA20.0I1GXA2_BRADI; Uncharacterized protein
STRINGBRADI1G35920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-55C3H family protein