PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G170000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 299aa    MW: 31113.5 Da    PI: 10.2168
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G170000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06101126227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C+ f     Ck G++C+FaHg+
  Brast07G170000.2.p 101 KTRMCNKFNTAEGCKWGNKCHFAHGE 126
                         89**********************96 PP
2zf-CCCH38.22.4e-12264289127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC++f++ G+C +GdrC+FaHg+
  Brast07G170000.2.p 264 FKTKLCDNFSK-GFCTFGDRCHFAHGE 289
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.93360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4933361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-63461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-73559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-1497131IPR000571Zinc finger, CCCH-type
SMARTSM003561.999126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.38999127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-899130IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-9169239IPR004087K Homology domain
PROSITE profilePS5008414.403170234IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.0E-14170238IPR004088K Homology domain, type 1
PfamPF000131.9E-10172235IPR004088K Homology domain, type 1
CDDcd001057.76E-13172234No hitNo description
SuperFamilySSF547914.43E-14172265IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.4E-16262294IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-8263289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9263293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317263290IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9264289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDAGRKRAVP DGTNGGGAAK RARESESFQM GVGSKSKPCT KFFSTAGCPF GSGCHFLHNF  60
PGGHQAVSKM TNLGGPAVAT PPGRMPMGPG VPDGPPTPGV KTRMCNKFNT AEGCKWGNKC  120
HFAHGERELG KPMLLNNSMV PPMGPRPNGH FVPPPMPAPD MVPPSTFGAS ATAKISVDAS  180
LAGAIIGKGG VNTKHISRMT GAKLAIRDNE ADPNFKNIEL EGTFDQIKYA SSMVTDLIVR  240
IGGNAPPAKN PTRGPHVGGG GNNFKTKLCD NFSKGFCTFG DRCHFAHGES ELRKSAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G170000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563620.10.0zinc finger CCCH domain-containing protein 44 isoform X2
SwissprotQ69XQ31e-171C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLI1GXA20.0I1GXA2_BRADI; Uncharacterized protein
STRINGBRADI1G35920.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-55C3H family protein