PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G170000.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 230aa    MW: 23986.5 Da    PI: 9.9161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G170000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-063257227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+ C+ f     Ck G++C+FaHg+
  Brast07G170000.3.p 32 KTRMCNKFNTAEGCKWGNKCHFAHGE 57
                        89**********************96 PP
2zf-CCCH38.71.7e-12195220127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC++f++ G+C +GdrC+FaHg+
  Brast07G170000.3.p 195 FKTKLCDNFSK-GFCTFGDRCHFAHGE 220
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.0E-142762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-83061IPR000571Zinc finger, CCCH-type
SMARTSM003561.93057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3893058IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-9100170IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.8E-14101169IPR004088K Homology domain, type 1
PROSITE profilePS5008414.403101165IPR004088K Homology domain, type 1
SuperFamilySSF547912.53E-14103196IPR004088K Homology domain, type 1
CDDcd001052.58E-13103165No hitNo description
PfamPF000131.2E-10103166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.3E-16193225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9194224IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-8194220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317194221IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10195220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTNLGGPAVA TPPGRMPMGP GVPDGPPTPG VKTRMCNKFN TAEGCKWGNK CHFAHGEREL  60
GKPMLLNNSM VPPMGPRPNG HFVPPPMPAP DMVPPSTFGA SATAKISVDA SLAGAIIGKG  120
GVNTKHISRM TGAKLAIRDN EADPNFKNIE LEGTFDQIKY ASSMVTDLIV RIGGNAPPAK  180
NPTRGPHVGG GGNNFKTKLC DNFSKGFCTF GDRCHFAHGE SELRKSAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G170000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227497.11e-164zinc finger CCCH domain-containing protein 44 isoform X1
SwissprotQ69XQ31e-132C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0Q3H5C31e-163A0A0Q3H5C3_BRADI; Uncharacterized protein
TrEMBLI1GXA21e-162I1GXA2_BRADI; Uncharacterized protein
STRINGBRADI1G35920.11e-163(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-56C3H family protein