PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G176800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 214aa    MW: 22836.2 Da    PI: 10.0513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G176800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.9e-082876153
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                        +++kGV     +g++ AeI+          ++++lg+f + + Aa a++ a++++
  Brast07G176800.1.p 28 KKFKGVKSLG-KGKYGAEIWRK-----EldRTVWLGTFPSLKLAACAYELAAREI 76
                        589***8666.7*******992.....245**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-92987IPR016177DNA-binding domain
PROSITE profilePS5103213.0632988IPR001471AP2/ERF domain
SMARTSM003801.3E-92994IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-122988IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAEIAKLAAD EAASWEEMCR AMGGPPTKKF KGVKSLGKGK YGAEIWRKEL DRTVWLGTFP  60
SLKLAACAYE LAAREILWQG RKASPNFEVI PSPALRREFD EELDKQELKH RARDGSRRPA  120
CLVRFRPAAN LFGPPIPVVA PPVQAAPAQS GVSATLKLGQ GASSSSSSSG EGQLASGGRL  180
AFKAPMLNPN LTFLAEPVTG DNFTADVWSR GGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G176800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229787.11e-110ethylene-responsive transcription factor CRF6
TrEMBLI1GX361e-109I1GX36_BRADI; Uncharacterized protein
STRINGBRADI1G35400.11e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3714723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.25e-09ERF family protein