PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G189400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ARF

Protein Properties

Length: 1163aa MW: 129107 Da PI: 6.5106

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G189400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.1	7.2e-23	147	248	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Brast07G189400.1.p 147 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV- 234 99***************************954.4444.48********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++++l+++++r+ Brast07G189400.1.p 235 -RDERQQLLLGIRRA 248 .4577788*9997 PP
2	Auxin_resp	113.2	2.4e-37	273	356	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+ S+Wr+L+ Brast07G189400.1.p 273 AAHADANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKTSQWRNLQ 356 78999*****************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	31	No hit	No description
SuperFamily	SSF101936	7.06E-42	136	276	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.4E-41	139	262	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.16E-19	146	238	No hit	No description
Pfam	PF02362	7.7E-21	147	248	IPR003340	B3 DNA binding domain
SMART	SM01019	5.5E-22	147	249	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.899	147	249	IPR003340	B3 DNA binding domain
Pfam	PF06507	6.4E-32	273	356	IPR010525	Auxin response factor
Pfam	PF02309	8.7E-10	1027	1113	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	25.965	1028	1112	IPR000270	PB1 domain
SuperFamily	SSF54277	1.86E-7	1043	1107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence Send to blast
MMKQQQQPAA AAVSAAAGAA VTVASLAGAG CEAEKKAPVI NSELWHACAG PLVSLPPAGS 60 LVVYFPQGHS EQVAASMQKD VDAHVPNYPN LPSKLICLLH NITLHADLET DEVYAQMTLQ 120 PVTSYGKEAL QLSELALKQA RPQNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM 180 QPPAQEIQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VIFVRDERQQ 240 LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHADANN SPFTIFYNPR ASPTEFVIPF 300 AKYQKAVYGN QLSLGMRFRM MFETEELGTR RYMGTITGIS DLDPVRWKTS QWRNLQVGWD 360 ESAAGERRNR VSIWEIEPVA APFFICPPPF FGAKRPRQLD DESSEMENLL KRAMPWLGEE 420 ICIKDPQTQN TIMPGLSLVQ WMNMNMQQGS SFANTAMQSE YLRSITNPSM QHIGSTDLSR 480 QLLQNQLLQQ NSIQFNTTKL PQQLQPNNDL SKAALPSNQL GVSTKPQEQT QDASNLQRQQ 540 QSMNYALPLS QAQTSLAQAQ VLVQNQMQQQ PMSQNQLPAA SQPLLPQQQQ QHQQQQHHHH 600 HHQQQQQQQQ QKLLHQQQQQ LLLQQQQLQQ HNQNQQQLNK MPAQVPNLAN QQLQLSDQQL 660 QLQLLQKLQQ QQHSLLSQPG VTLAQLPLIQ EQQKLLMDMQ QQLSNSHSLT QQQMMPQQST 720 KIPSQTTPMP LPMQPDTQQK LPQKQAVAAD TSEAAVPPTT SLNFSSANGS PLRMPGATHS 780 VVTEEIPSCS TSPSTANGNH LLQPGTGRNQ YCNMINTEKV PQSTAPMSVP SSLEVVTGPP 840 RMATELPKLT SNVKQSMVAS KLQNAGAGPQ NFVDNAPPTD YLETASSATS VWLSQTDGLL 900 HQSFPMSNFN QQPMFKDAPP ETEIHADVPS NNTLFGISND GQVGFPMGTD DFLTNGLDAT 960 KYQNHISTDI DNNYIIPKDA QQEISSSMVS QSFGASDMAF NSIDSGINDG TFFNRSSWPP 1020 APPIKRMRTF TKVYKRGAVG RSIDISQYAG YDELKHALAR MFSIEGQLEE RQRIGWKLVY 1080 RDHEDDILLL GDDPWEEFVN CVKYIRILSP QEVQQMSLDG DLGSNIIPNQ ACSSSDGGGN 1140 AWRARCDQNS GNPSTGSYDQ FE*

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence Send to blast

MMKQQQQPAA AAVSAAAGAA VTVASLAGAG CEAEKKAPVI NSELWHACAG PLVSLPPAGS  60
LVVYFPQGHS EQVAASMQKD VDAHVPNYPN LPSKLICLLH NITLHADLET DEVYAQMTLQ  120
PVTSYGKEAL QLSELALKQA RPQNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM  180
QPPAQEIQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VIFVRDERQQ  240
LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHADANN SPFTIFYNPR ASPTEFVIPF  300
AKYQKAVYGN QLSLGMRFRM MFETEELGTR RYMGTITGIS DLDPVRWKTS QWRNLQVGWD  360
ESAAGERRNR VSIWEIEPVA APFFICPPPF FGAKRPRQLD DESSEMENLL KRAMPWLGEE  420
ICIKDPQTQN TIMPGLSLVQ WMNMNMQQGS SFANTAMQSE YLRSITNPSM QHIGSTDLSR  480
QLLQNQLLQQ NSIQFNTTKL PQQLQPNNDL SKAALPSNQL GVSTKPQEQT QDASNLQRQQ  540
QSMNYALPLS QAQTSLAQAQ VLVQNQMQQQ PMSQNQLPAA SQPLLPQQQQ QHQQQQHHHH  600
HHQQQQQQQQ QKLLHQQQQQ LLLQQQQLQQ HNQNQQQLNK MPAQVPNLAN QQLQLSDQQL  660
QLQLLQKLQQ QQHSLLSQPG VTLAQLPLIQ EQQKLLMDMQ QQLSNSHSLT QQQMMPQQST  720
KIPSQTTPMP LPMQPDTQQK LPQKQAVAAD TSEAAVPPTT SLNFSSANGS PLRMPGATHS  780
VVTEEIPSCS TSPSTANGNH LLQPGTGRNQ YCNMINTEKV PQSTAPMSVP SSLEVVTGPP  840
RMATELPKLT SNVKQSMVAS KLQNAGAGPQ NFVDNAPPTD YLETASSATS VWLSQTDGLL  900
HQSFPMSNFN QQPMFKDAPP ETEIHADVPS NNTLFGISND GQVGFPMGTD DFLTNGLDAT  960
KYQNHISTDI DNNYIIPKDA QQEISSSMVS QSFGASDMAF NSIDSGINDG TFFNRSSWPP  1020
APPIKRMRTF TKVYKRGAVG RSIDISQYAG YDELKHALAR MFSIEGQLEE RQRIGWKLVY  1080
RDHEDDILLL GDDPWEEFVN CVKYIRILSP QEVQQMSLDG DLGSNIIPNQ ACSSSDGGGN  1140
AWRARCDQNS GNPSTGSYDQ FE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-168	36	377	47	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G189400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369713	0.0	AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563519.1	0.0	auxin response factor 19
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	I1GWQ9	0.0	I1GWQ9_BRADI; Auxin response factor
STRING	BRADI1G34340.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Link Out ? help Back to Top
Phytozome	Brast07G189400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]